Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AL538_RS08400 Genome accession   NZ_CP014038
Coordinates   1646199..1646774 (-) Length   191 a.a.
NCBI ID   WP_005451499.1    Uniprot ID   A0A9X3MLM3
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1641199..1651774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS08375 (AL538_07755) aroB 1641482..1642582 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  AL538_RS08380 (AL538_07760) aroK 1642614..1643132 (-) 519 WP_005451507.1 shikimate kinase AroK -
  AL538_RS08385 (AL538_07765) pilQ 1643322..1645073 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ Machinery gene
  AL538_RS08390 (AL538_07770) pilP 1645108..1645623 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  AL538_RS08395 (AL538_07775) pilO 1645613..1646206 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL538_RS08400 (AL538_07780) pilN 1646199..1646774 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  AL538_RS08405 (AL538_07785) pilM 1646758..1647774 (-) 1017 WP_026000383.1 type IV pilus assembly protein PilM Machinery gene
  AL538_RS08410 (AL538_07790) - 1647953..1650523 (+) 2571 WP_050935720.1 penicillin-binding protein 1A -
  AL538_RS08415 (AL538_07795) oxyR 1650590..1651498 (-) 909 WP_005451495.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22244.63 Da        Isoelectric Point: 9.1586

>NTDB_id=167785 AL538_RS08400 WP_005451499.1 1646199..1646774(-) (pilN) [Vibrio harveyi strain FDAARGOS_107]
MLYHINLLAWRENQREEHRRRFLSLIVLGVIVALGVQWGIGKFYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASVKGGNQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=167785 AL538_RS08400 WP_005451499.1 1646199..1646774(-) (pilN) [Vibrio harveyi strain FDAARGOS_107]
ATGCTGTATCACATTAACCTCCTTGCGTGGCGTGAGAATCAACGTGAAGAACACCGCCGCCGCTTTCTCAGTTTGATCGT
CTTGGGGGTGATTGTTGCGTTGGGCGTGCAATGGGGCATTGGTAAGTTCTATCAATATCAGCAGGATCAACAACAGCAGC
GCCTTGATTATTTGGCGCACTATATCTCCCAGCTTGATAAACGAATCGAAGCGATGAAGATTGCTGAACAAGAGCACAGC
AAGATCTTGGAGAGGTTAAAGATCGTTGAAGGTTTGCAAAATGGGCGTAATAAGACCACGGAGTTCATGAACCTGATGCC
GTCGGTGATCCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGATTATGAAATTGAAATCTCGGGTATCTCTGATA
GTACACCTCGCTTGGCCACCATGCTCGACAACATGGAGCGTTCAGCCAAGCTGCTAGATGTCGACATGCATTCTATCGTT
CATGGTAAAGCGCGTTTTGGGAAAGAGTTTCAGACTTTCAAAGTTTCCTTCATGTTCAAAGACGCCTCGGTGAAAGGAGG
TAACCAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

94.241

100

0.942
  pilN Vibrio cholerae strain A1552

60.452

92.67

0.56

Multiple sequence alignment