Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   AL538_RS08390 Genome accession   NZ_CP014038
Coordinates   1645108..1645623 (-) Length   171 a.a.
NCBI ID   WP_005451501.1    Uniprot ID   A0A9X3RXU4
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640108..1650623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS29380 - 1640585..1641428 (-) 844 Protein_1504 ATP-binding protein -
  AL538_RS08375 (AL538_07755) aroB 1641482..1642582 (-) 1101 WP_038898114.1 3-dehydroquinate synthase -
  AL538_RS08380 (AL538_07760) aroK 1642614..1643132 (-) 519 WP_005451507.1 shikimate kinase AroK -
  AL538_RS08385 (AL538_07765) pilQ 1643322..1645073 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ Machinery gene
  AL538_RS08390 (AL538_07770) pilP 1645108..1645623 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  AL538_RS08395 (AL538_07775) pilO 1645613..1646206 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL538_RS08400 (AL538_07780) pilN 1646199..1646774 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  AL538_RS08405 (AL538_07785) pilM 1646758..1647774 (-) 1017 WP_026000383.1 type IV pilus assembly protein PilM Machinery gene
  AL538_RS08410 (AL538_07790) - 1647953..1650523 (+) 2571 WP_050935720.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19142.27 Da        Isoelectric Point: 10.1513

>NTDB_id=167783 AL538_RS08390 WP_005451501.1 1645108..1645623(-) (pilP) [Vibrio harveyi strain FDAARGOS_107]
MRSKSLLMVCIAGVLTACQANDESLTEFIRDVENQARRDVTKLQPVEEYVVVNYEPEILRAPFELPKEATIATQPVARKD
CWQPPSRKRTGKLERFPLAQLRLKGVMGIGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=167783 AL538_RS08390 WP_005451501.1 1645108..1645623(-) (pilP) [Vibrio harveyi strain FDAARGOS_107]
ATGAGAAGTAAATCTTTGCTGATGGTGTGTATTGCTGGCGTTTTGACTGCCTGCCAAGCCAATGATGAATCACTGACGGA
ATTTATTCGTGACGTGGAGAACCAAGCTCGCCGTGATGTCACCAAACTGCAGCCTGTTGAAGAGTATGTTGTCGTTAATT
ACGAACCCGAAATATTGCGTGCACCTTTCGAATTACCAAAAGAGGCAACGATTGCGACTCAACCTGTTGCAAGAAAAGAC
TGCTGGCAACCTCCTTCAAGAAAGCGAACTGGCAAATTGGAAAGGTTTCCTCTTGCGCAACTGCGCTTGAAGGGTGTGAT
GGGTATCGGCAGCAGTGTTTCTGGGTTGGTTCAGGCTCCGAATGGCACTGTTTACAAAGTAAAACCAGGTCAATACCTCG
GACGCAACAATGGCAAGGTTACCCATGTATCCCACAACTATTTATTGATTAATGAAACCTTGCCAGACGGTTTGGGCTGT
TGGCAAAAACGCAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.058

100

0.901
  pilP Vibrio cholerae strain A1552

59.494

92.398

0.55

Multiple sequence alignment