Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilN   Type   Machinery gene
Locus tag   AL536_RS44795 Genome accession   NZ_CP014035
Coordinates   3052796..3053386 (+) Length   196 a.a.
NCBI ID   WP_061057155.1    Uniprot ID   A0AAX2LN00
Organism   Vibrio fluvialis strain ATCC 33809     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3047796..3058386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS44780 (AL536_21800) oxyR 3048222..3049118 (+) 897 WP_020329438.1 DNA-binding transcriptional regulator OxyR -
  AL536_RS44785 (AL536_21805) - 3049179..3051659 (-) 2481 WP_032081685.1 penicillin-binding protein 1A -
  AL536_RS44790 (AL536_21810) pilM 3051802..3052806 (+) 1005 WP_061057154.1 type IV pilus assembly protein PilM Machinery gene
  AL536_RS44795 (AL536_21815) pilN 3052796..3053386 (+) 591 WP_061057155.1 PilN domain-containing protein Machinery gene
  AL536_RS44800 (AL536_21820) pilO 3053379..3053969 (+) 591 WP_020429291.1 type 4a pilus biogenesis protein PilO Machinery gene
  AL536_RS44805 (AL536_21825) pilP 3053959..3054471 (+) 513 WP_020429290.1 pilus assembly protein PilP Machinery gene
  AL536_RS44810 (AL536_21830) pilQ 3054496..3056232 (+) 1737 WP_061057156.1 type IV pilus secretin PilQ Machinery gene
  AL536_RS44815 (AL536_21835) aroK 3056420..3056938 (+) 519 WP_004728569.1 shikimate kinase AroK -
  AL536_RS44820 (AL536_21840) aroB 3056966..3058051 (+) 1086 WP_024374091.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 22277.69 Da        Isoelectric Point: 9.8751

>NTDB_id=167713 AL536_RS44795 WP_061057155.1 3052796..3053386(+) (pilN) [Vibrio fluvialis strain ATCC 33809]
MLHNINLIPWREAQREAHKRRFVGLCVLALMVALGVQWGAGFYLDQQTQAQQQRLAFLNQHIRQLDAQIAELKVTEQEHK
ALLTRLNIVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGEEIEISGISDSTARLATMLDNLEKSTQLSEVGMHSIV
SGNRRFGKQFQSFKVSFLFHASAHKPLATVTGEKHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=167713 AL536_RS44795 WP_061057155.1 3052796..3053386(+) (pilN) [Vibrio fluvialis strain ATCC 33809]
ATGCTGCATAACATCAACCTTATTCCCTGGCGTGAAGCGCAGCGCGAGGCGCACAAACGCCGCTTCGTCGGACTGTGCGT
GCTCGCGTTGATGGTGGCATTGGGCGTGCAGTGGGGCGCTGGCTTTTATCTCGATCAGCAAACTCAGGCTCAGCAGCAGC
GACTGGCATTTCTCAATCAGCACATTCGCCAACTGGATGCGCAGATTGCCGAGCTGAAAGTGACCGAGCAAGAGCATAAA
GCGCTGCTGACCCGGCTCAATATCGTCGAATCGTTACAGCAAAAGCGCAATAAGACCACAGAGTTCATGAACCTGATGCC
GCAACTGATTCCGGAAGGTGTCTACGTCGACAAGATCAAAATGAACGGCGAAGAAATTGAAATCAGCGGCATCAGTGACA
GTACTGCCCGACTCGCCACCATGCTCGACAATCTGGAAAAATCGACCCAACTGTCTGAGGTCGGTATGCATTCGATCGTG
TCAGGTAATCGACGTTTTGGTAAACAATTTCAGAGCTTTAAGGTGTCATTTCTGTTTCATGCGTCAGCTCATAAACCGCT
CGCCACCGTGACAGGAGAGAAACATGGCTAA

Domains


Predicted by InterproScan.

(103-176)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

69.149

95.918

0.663

  pilN Vibrio campbellii strain DS40M4

61.735

100

0.617


Multiple sequence alignment