Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | AL536_RS44805 | Genome accession | NZ_CP014035 |
| Coordinates | 3053959..3054471 (+) | Length | 170 a.a. |
| NCBI ID | WP_020429290.1 | Uniprot ID | A0AAX2LJQ5 |
| Organism | Vibrio fluvialis strain ATCC 33809 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3048959..3059471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL536_RS44785 (AL536_21805) | - | 3049179..3051659 (-) | 2481 | WP_032081685.1 | penicillin-binding protein 1A | - |
| AL536_RS44790 (AL536_21810) | pilM | 3051802..3052806 (+) | 1005 | WP_061057154.1 | type IV pilus assembly protein PilM | Machinery gene |
| AL536_RS44795 (AL536_21815) | pilN | 3052796..3053386 (+) | 591 | WP_061057155.1 | PilN domain-containing protein | Machinery gene |
| AL536_RS44800 (AL536_21820) | pilO | 3053379..3053969 (+) | 591 | WP_020429291.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AL536_RS44805 (AL536_21825) | pilP | 3053959..3054471 (+) | 513 | WP_020429290.1 | pilus assembly protein PilP | Machinery gene |
| AL536_RS44810 (AL536_21830) | pilQ | 3054496..3056232 (+) | 1737 | WP_061057156.1 | type IV pilus secretin PilQ | Machinery gene |
| AL536_RS44815 (AL536_21835) | aroK | 3056420..3056938 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| AL536_RS44820 (AL536_21840) | aroB | 3056966..3058051 (+) | 1086 | WP_024374091.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 19055.99 Da Isoelectric Point: 10.0588
>NTDB_id=167715 AL536_RS44805 WP_020429290.1 3053959..3054471(+) (pilP) [Vibrio fluvialis strain ATCC 33809]
MKNKRCWLLGALLLSGCKANQESLSDYVKHVEQQAQREVATLAPVVQFDVFHYAQHHQREPFVLPQEALVQNQPRMKSDC
WQPSPRAKSGSLERYPLSQLRLRGVMSSGGSVSALIQTPQGSVMKIKAGQYLGLNNGRVTRVADDYLLIKETLPDGLGCW
NQRNVKLALK
MKNKRCWLLGALLLSGCKANQESLSDYVKHVEQQAQREVATLAPVVQFDVFHYAQHHQREPFVLPQEALVQNQPRMKSDC
WQPSPRAKSGSLERYPLSQLRLRGVMSSGGSVSALIQTPQGSVMKIKAGQYLGLNNGRVTRVADDYLLIKETLPDGLGCW
NQRNVKLALK
Nucleotide
Download Length: 513 bp
>NTDB_id=167715 AL536_RS44805 WP_020429290.1 3053959..3054471(+) (pilP) [Vibrio fluvialis strain ATCC 33809]
ATGAAAAATAAGCGCTGCTGGCTGTTAGGAGCACTACTGCTCAGTGGTTGTAAAGCCAATCAGGAATCGCTATCCGATTA
CGTTAAACACGTCGAACAGCAGGCGCAGCGTGAAGTGGCGACACTGGCTCCGGTAGTTCAGTTCGACGTGTTTCATTATG
CCCAACATCATCAGCGTGAGCCGTTTGTCTTGCCTCAGGAAGCGCTGGTGCAAAACCAACCGCGAATGAAATCGGATTGC
TGGCAACCTTCACCGCGCGCCAAAAGTGGTTCGCTGGAGCGTTACCCTCTCAGTCAACTGCGTTTACGAGGTGTCATGAG
CAGTGGTGGCTCTGTCTCCGCGTTGATTCAAACGCCGCAAGGTTCGGTAATGAAAATTAAAGCAGGACAGTACCTGGGAT
TGAACAACGGTCGAGTGACCCGCGTGGCAGACGATTATCTGCTGATCAAAGAGACCCTGCCGGACGGATTGGGATGTTGG
AATCAACGCAACGTTAAATTGGCTTTGAAATAA
ATGAAAAATAAGCGCTGCTGGCTGTTAGGAGCACTACTGCTCAGTGGTTGTAAAGCCAATCAGGAATCGCTATCCGATTA
CGTTAAACACGTCGAACAGCAGGCGCAGCGTGAAGTGGCGACACTGGCTCCGGTAGTTCAGTTCGACGTGTTTCATTATG
CCCAACATCATCAGCGTGAGCCGTTTGTCTTGCCTCAGGAAGCGCTGGTGCAAAACCAACCGCGAATGAAATCGGATTGC
TGGCAACCTTCACCGCGCGCCAAAAGTGGTTCGCTGGAGCGTTACCCTCTCAGTCAACTGCGTTTACGAGGTGTCATGAG
CAGTGGTGGCTCTGTCTCCGCGTTGATTCAAACGCCGCAAGGTTCGGTAATGAAAATTAAAGCAGGACAGTACCTGGGAT
TGAACAACGGTCGAGTGACCCGCGTGGCAGACGATTATCTGCTGATCAAAGAGACCCTGCCGGACGGATTGGGATGTTGG
AATCAACGCAACGTTAAATTGGCTTTGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
69.767 |
100 |
0.706 |
| pilP | Vibrio campbellii strain DS40M4 |
54.971 |
100 |
0.553 |