Detailed information NTG0167712

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: AL536_RS44790
• Genome accession: NZ_CP014035
• Coordinates: 3051802..3052806 (+)
• Length: 334 a.a.
• NCBI ID: WP_061057154.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain ATCC 33809
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3046802..3057806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL536_RS44770 (AL536_21790)	-	3046952..3047215 (-)	264	WP_061057152.1	DUF3624 domain-containing protein	-
AL536_RS44775 (AL536_21795)	-	3047344..3048078 (-)	735	WP_061057153.1	glutathione peroxidase	-
AL536_RS44780 (AL536_21800)	oxyR	3048222..3049118 (+)	897	WP_020329438.1	DNA-binding transcriptional regulator OxyR	-
AL536_RS44785 (AL536_21805)	-	3049179..3051659 (-)	2481	WP_032081685.1	penicillin-binding protein 1A	-
AL536_RS44790 (AL536_21810)	pilM	3051802..3052806 (+)	1005	WP_061057154.1	type IV pilus assembly protein PilM	Machinery gene
AL536_RS44795 (AL536_21815)	pilN	3052796..3053386 (+)	591	WP_061057155.1	PilN domain-containing protein	Machinery gene
AL536_RS44800 (AL536_21820)	pilO	3053379..3053969 (+)	591	WP_020429291.1	type 4a pilus biogenesis protein PilO	Machinery gene
AL536_RS44805 (AL536_21825)	pilP	3053959..3054471 (+)	513	WP_020429290.1	pilus assembly protein PilP	Machinery gene
AL536_RS44810 (AL536_21830)	pilQ	3054496..3056232 (+)	1737	WP_061057156.1	type IV pilus secretin PilQ	Machinery gene
AL536_RS44815 (AL536_21835)	aroK	3056420..3056938 (+)	519	WP_004728569.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36905.28 Da
• Isoelectric Point: 6.6961

>NTDB_id=167712 AL536_RS44790 WP_061057154.1 3051802..3052806(+) (pilM) [Vibrio fluvialis strain ATCC 33809]
MGKSLVTGVDIGHHSIKAVVLKPKGESYSLVGYQEIVVSEDIFADNHTLNYQKIVKKLKELKKGLPLFSRKVALAVPDNA
VISKVLQIDSELDASEQEFAVYQAFSHQSPLPIEELSLDFVVTGEKTLGRSSSLTYQVYATRREVIDNRLSAMSKAGFEP
LLFDMQIHGLLNIWQWVSRAQQRTDWMLVDVGFSQTSLCIDFADKTPFYKDIPLGTRQLVAATSGGNADLTSPQAHFIQE
LVERLARQIQLFLSLQGHQPLAGIWLSGGGAATEGLAQAISERLVLPCELFNPLAEFTCRASLRRQPQVDLQRFSTAAGL
ALRGLNWLENGHAA

Nucleotide

• Length: 1005 bp

>NTDB_id=167712 AL536_RS44790 WP_061057154.1 3051802..3052806(+) (pilM) [Vibrio fluvialis strain ATCC 33809]
ATGGGTAAATCATTAGTTACAGGTGTCGATATTGGCCACCACAGTATTAAAGCGGTGGTTTTAAAACCGAAAGGCGAATC
GTATTCGCTGGTCGGTTACCAAGAGATAGTCGTATCCGAGGATATTTTCGCTGATAACCACACGCTGAATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAAAAAGGGATTACCGCTATTTAGTCGTAAAGTGGCGCTGGCTGTACCGGACAACGCA
GTAATAAGTAAGGTATTACAGATAGATAGCGAACTGGATGCCAGCGAACAAGAGTTCGCGGTCTATCAGGCTTTTTCCCA
TCAATCGCCGCTACCCATCGAAGAGTTGAGCCTGGATTTCGTTGTCACCGGAGAAAAAACACTGGGGCGCAGCAGTTCGT
TGACGTATCAGGTCTATGCAACCCGACGTGAAGTGATCGACAACCGTTTGTCTGCGATGAGCAAAGCGGGTTTTGAGCCG
CTGCTGTTTGATATGCAGATTCACGGCCTGCTCAATATCTGGCAATGGGTCAGCCGTGCTCAGCAACGCACCGATTGGAT
GCTGGTCGATGTCGGGTTCAGCCAAACCTCATTGTGCATCGACTTTGCCGATAAAACGCCGTTTTACAAAGACATTCCGT
TGGGAACCCGCCAACTGGTTGCGGCGACCTCCGGTGGTAACGCTGACCTTACCAGCCCGCAAGCACACTTCATTCAGGAG
TTGGTTGAGCGTCTGGCGCGCCAGATCCAGCTGTTTCTTTCTCTGCAAGGCCATCAACCGCTGGCCGGTATCTGGCTATC
CGGTGGCGGCGCGGCAACGGAAGGTTTGGCGCAGGCGATTAGCGAACGTCTGGTTCTGCCTTGCGAGCTGTTTAACCCTC
TGGCGGAGTTTACTTGCCGCGCATCGCTACGCCGCCAGCCTCAGGTTGATTTGCAGCGTTTTAGCACTGCGGCAGGCTTG
GCGCTGCGCGGGCTCAATTGGCTGGAGAACGGCCATGCTGCATAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (237-324)

• Type IV pilus assembly protein PilM; (PilM_2) (8-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	65.68	100	0.665
pilM	Vibrio campbellii strain DS40M4	47.826	100	0.494