Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL475_RS12840 Genome accession   NZ_CP014033
Coordinates   1053131..1053649 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048131..1058649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS12815 (AL475_04855) rimM 1048253..1048807 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  AL475_RS12820 (AL475_04860) rpsP 1048835..1049083 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  AL475_RS12825 (AL475_04865) ffh 1049309..1050691 (-) 1383 WP_020330453.1 signal recognition particle protein -
  AL475_RS12830 (AL475_04870) - 1050904..1051698 (+) 795 WP_020330452.1 inner membrane protein YpjD -
  AL475_RS12835 (AL475_04875) - 1051788..1053062 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  AL475_RS12840 (AL475_04880) luxS 1053131..1053649 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  AL475_RS12845 (AL475_04885) - 1053675..1054280 (-) 606 WP_104966132.1 hypothetical protein -
  AL475_RS12850 (AL475_04890) gshA 1054282..1055847 (-) 1566 WP_104966133.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=167640 AL475_RS12840 WP_020330449.1 1053131..1053649(-) (luxS) [Vibrio fluvialis strain FDAARGOS_100]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=167640 AL475_RS12840 WP_020330449.1 1053131..1053649(-) (luxS) [Vibrio fluvialis strain FDAARGOS_100]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCAAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGTCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
AATGCAAGATGTACTGAAAGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGCACGGCAGCGATGC
ACTCGTTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment