Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AL515_RS03130 | Genome accession | NZ_CP014030 |
| Coordinates | 646476..647000 (+) | Length | 174 a.a. |
| NCBI ID | WP_003826621.1 | Uniprot ID | A0A5B0T4S2 |
| Organism | Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 641476..652000
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL515_RS03115 (AL515_03000) | aphA | 642134..642847 (+) | 714 | WP_048213924.1 | acid phosphatase AphA | - |
| AL515_RS03120 (AL515_03005) | - | 642968..643324 (+) | 357 | WP_048213923.1 | MmcQ/YjbR family DNA-binding protein | - |
| AL515_RS03125 (AL515_03010) | uvrA | 643402..646224 (-) | 2823 | WP_061067023.1 | excinuclease ABC subunit UvrA | - |
| AL515_RS03130 (AL515_03015) | ssb | 646476..647000 (+) | 525 | WP_003826621.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| AL515_RS03135 (AL515_03020) | - | 647482..649791 (+) | 2310 | WP_061067024.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| AL515_RS03140 (AL515_03025) | - | 649875..650156 (-) | 282 | WP_061067025.1 | YjcB family protein | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18621.66 Da Isoelectric Point: 5.2456
>NTDB_id=167583 AL515_RS03130 WP_003826621.1 646476..647000(+) (ssb) [Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=167583 AL515_RS03130 WP_003826621.1 646476..647000(+) (ssb) [Citrobacter sp. FDAARGOS_156 strain FDAARGOS_155]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAATACACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCGCCGGCAGGTGGTGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTTTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAATACACCACTGAAGTCGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCGCCGGCAGGTGGTGGTCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.889 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |