Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AL533_RS18475 Genome accession   NZ_CP014019
Coordinates   3859256..3859843 (+) Length   195 a.a.
NCBI ID   WP_016803588.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3854256..3864843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS18450 (AL533_18450) - 3854875..3855228 (+) 354 WP_104919205.1 DUF1304 domain-containing protein -
  AL533_RS18455 (AL533_18455) - 3855281..3855622 (+) 342 WP_002053924.1 GlpM family protein -
  AL533_RS18460 (AL533_18460) tenA 3855673..3856347 (-) 675 WP_000899420.1 thiaminase II -
  AL533_RS18465 (AL533_18465) - 3856611..3857693 (+) 1083 WP_002054048.1 DUF475 domain-containing protein -
  AL533_RS18470 (AL533_18470) - 3857840..3859204 (+) 1365 WP_004711530.1 MFS transporter -
  AL533_RS18475 (AL533_18475) ssb 3859256..3859843 (+) 588 WP_016803588.1 single-stranded DNA-binding protein Machinery gene
  AL533_RS18480 (AL533_18480) - 3859884..3860207 (-) 324 WP_006580853.1 AzlD domain-containing protein -
  AL533_RS18485 (AL533_18485) - 3860204..3860899 (-) 696 WP_029768419.1 AzlC family ABC transporter permease -
  AL533_RS18490 (AL533_18490) - 3860968..3861516 (+) 549 WP_006582483.1 helix-turn-helix domain-containing protein -
  AL533_RS18495 (AL533_18495) - 3861822..3863264 (+) 1443 WP_032011888.1 amino acid permease -
  AL533_RS18500 (AL533_18500) - 3863330..3864829 (-) 1500 WP_104919206.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21122.93 Da        Isoelectric Point: 6.4822

>NTDB_id=167321 AL533_RS18475 WP_016803588.1 3859256..3859843(+) (ssb) [Acinetobacter nosocomialis strain FDAARGOS_129]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=167321 AL533_RS18475 WP_016803588.1 3859256..3859843(+) (ssb) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTAACCCAGTTTTCAATCGCGACAAGTGAAGTTTGGACCGATAAAACGTCAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGTCAGGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.725

100

0.538
  ssb Vibrio cholerae strain A1552

43.842

100

0.456
  ssb Neisseria meningitidis MC58

37.374

100

0.379
  ssb Neisseria gonorrhoeae MS11

37.374

100

0.379

Multiple sequence alignment