Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AL533_RS00605 Genome accession   NZ_CP014019
Coordinates   113649..114533 (+) Length   294 a.a.
NCBI ID   WP_016804769.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108649..119533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS00580 (AL533_00580) - 109041..110288 (-) 1248 WP_002050751.1 YihY family inner membrane protein -
  AL533_RS00585 (AL533_00585) wrbA 110569..111171 (+) 603 WP_185126661.1 NAD(P)H:quinone oxidoreductase -
  AL533_RS00590 (AL533_00590) - 111226..111801 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  AL533_RS00595 (AL533_00595) - 111873..112586 (-) 714 WP_002050776.1 DUF3108 domain-containing protein -
  AL533_RS00600 (AL533_00600) - 112744..113415 (-) 672 WP_016804770.1 hypothetical protein -
  AL533_RS00605 (AL533_00605) tonB2 113649..114533 (+) 885 WP_016804769.1 energy transducer TonB Machinery gene
  AL533_RS00610 (AL533_00610) ybeY 114623..115099 (-) 477 WP_004711856.1 rRNA maturation RNase YbeY -
  AL533_RS00615 (AL533_00615) - 115109..116197 (-) 1089 WP_002050786.1 PhoH family protein -
  AL533_RS00620 (AL533_00620) miaB 116235..117686 (-) 1452 WP_104918602.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33674.52 Da        Isoelectric Point: 9.4514

>NTDB_id=167291 AL533_RS00605 WP_016804769.1 113649..114533(+) (tonB2) [Acinetobacter nosocomialis strain FDAARGOS_129]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFILLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDTSTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDTNMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=167291 AL533_RS00605 WP_016804769.1 113649..114533(+) (tonB2) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTTTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTATACTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATACTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAGGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCCTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCGTTTGGTCGTTTTGA
TACAAATATGAAGGATATTTCCGAGCTACGTATTGTGCGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946

Multiple sequence alignment