Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AL480_RS13605 Genome accession   NZ_CP014014
Coordinates   2827904..2828962 (-) Length   352 a.a.
NCBI ID   WP_010484061.1    Uniprot ID   A0A0L8AA94
Organism   Stenotrophomonas maltophilia strain FDAARGOS_92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2822904..2833962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL480_RS13585 (AL480_13585) - 2823854..2825821 (-) 1968 WP_033834937.1 type IV pilus secretin PilQ family protein -
  AL480_RS13590 (AL480_13590) - 2825843..2826346 (-) 504 WP_044571441.1 pilus assembly protein PilP -
  AL480_RS13595 (AL480_13595) pilO 2826373..2827029 (-) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  AL480_RS13600 (AL480_13600) - 2827026..2827904 (-) 879 WP_033834938.1 PilN domain-containing protein -
  AL480_RS13605 (AL480_13605) pilM 2827904..2828962 (-) 1059 WP_010484061.1 pilus assembly protein PilM Machinery gene
  AL480_RS13610 (AL480_13610) - 2829182..2831605 (+) 2424 WP_033834939.1 penicillin-binding protein 1A -
  AL480_RS13615 (AL480_13615) - 2831934..2832578 (+) 645 WP_006466035.1 hypothetical protein -
  AL480_RS13620 (AL480_13620) - 2832755..2833498 (-) 744 WP_033834940.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37753.41 Da        Isoelectric Point: 4.4089

>NTDB_id=167197 AL480_RS13605 WP_010484061.1 2827904..2828962(-) (pilM) [Stenotrophomonas maltophilia strain FDAARGOS_92]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=167197 AL480_RS13605 WP_010484061.1 2827904..2828962(-) (pilM) [Stenotrophomonas maltophilia strain FDAARGOS_92]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACGCCGTGGAACCTCTTCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCATTGGAGCTGGGG
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTATGCCCTGGTGGCCAGCGAGCTGCCGGT
GTCCATCGAGGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCTTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCTACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGTGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAATCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8AA94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment