Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | APT61_RS20865 | Genome accession | NZ_CP013990 |
| Coordinates | 4502150..4502680 (-) | Length | 176 a.a. |
| NCBI ID | WP_032615999.1 | Uniprot ID | A0A3E1ZQY9 |
| Organism | Leclercia adecarboxylata strain USDA-ARS-USMARC-60222 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4497150..4507680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APT61_RS20845 (APT61_20845) | soxS | 4497584..4497910 (+) | 327 | WP_039031951.1 | superoxide response transcriptional regulator SoxS | - |
| APT61_RS20850 (APT61_20850) | - | 4497907..4499493 (-) | 1587 | WP_059308943.1 | EAL domain-containing protein | - |
| APT61_RS20855 (APT61_20855) | - | 4499832..4501160 (-) | 1329 | WP_230431116.1 | GGDEF domain-containing protein | - |
| APT61_RS20860 (APT61_20860) | - | 4501771..4502052 (+) | 282 | WP_032616001.1 | YjcB family protein | - |
| APT61_RS20865 (APT61_20865) | ssb | 4502150..4502680 (-) | 531 | WP_032615999.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| APT61_RS20870 (APT61_20870) | uvrA | 4502931..4505756 (+) | 2826 | WP_059308945.1 | excinuclease ABC subunit UvrA | - |
| APT61_RS20875 (APT61_20875) | - | 4505757..4506110 (-) | 354 | WP_032615995.1 | MmcQ/YjbR family DNA-binding protein | - |
| APT61_RS20880 (APT61_20880) | - | 4506113..4506529 (-) | 417 | WP_032615993.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| APT61_RS20885 (APT61_20885) | aphA | 4506641..4507354 (-) | 714 | WP_059308946.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18849.87 Da Isoelectric Point: 5.2456
>NTDB_id=166958 APT61_RS20865 WP_032615999.1 4502150..4502680(-) (ssb) [Leclercia adecarboxylata strain USDA-ARS-USMARC-60222]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=166958 APT61_RS20865 WP_032615999.1 4502150..4502680(-) (ssb) [Leclercia adecarboxylata strain USDA-ARS-USMARC-60222]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTAAACGTCGG
CGGCACCATGCAGATGTTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGCCGTCTGCACCA
GCGCAGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTAAACGTCGG
CGGCACCATGCAGATGTTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGCCGTCTGCACCA
GCGCAGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.243 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
56.684 |
100 |
0.602 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.472 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.472 |