Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   APT59_RS17895 Genome accession   NZ_CP013987
Coordinates   3927845..3929185 (+) Length   446 a.a.
NCBI ID   WP_059316093.1    Uniprot ID   A0A0U4VRY9
Organism   Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3922845..3934185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT59_RS17875 (APT59_17875) - 3923148..3924173 (+) 1026 WP_059316089.1 outer membrane protein assembly factor BamD -
  APT59_RS17880 (APT59_17880) - 3924282..3925904 (-) 1623 WP_059316090.1 NAD+ synthase -
  APT59_RS17885 (APT59_17885) - 3926036..3926284 (+) 249 WP_059316091.1 PP0621 family protein -
  APT59_RS17890 (APT59_17890) pilS 3926268..3927842 (+) 1575 WP_059316092.1 sensor histidine kinase Regulator
  APT59_RS17895 (APT59_17895) pilR 3927845..3929185 (+) 1341 WP_059316093.1 sigma-54-dependent transcriptional regulator Regulator
  APT59_RS17900 (APT59_17900) - 3929186..3930244 (-) 1059 WP_059316094.1 NAD(P)/FAD-dependent oxidoreductase -
  APT59_RS22270 - 3930386..3930919 (+) 534 WP_082696426.1 GspH/FimT family pseudopilin -
  APT59_RS22275 - 3931016..3931483 (+) 468 WP_082696385.1 GspH/FimT family pseudopilin -
  APT59_RS17910 (APT59_17910) pilV 3931480..3931983 (+) 504 WP_059316096.1 type IV pilus modification protein PilV -
  APT59_RS17915 (APT59_17915) - 3931980..3933077 (+) 1098 WP_059316097.1 PilW family protein -
  APT59_RS17920 (APT59_17920) - 3933074..3933541 (+) 468 WP_059316098.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49000.26 Da        Isoelectric Point: 5.8417

>NTDB_id=166875 APT59_RS17895 WP_059316093.1 3927845..3929185(+) (pilR) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNITDARAILERESFDLCLTDMRLPDGSGLELINFIQQRMPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPTPPAPGASETQLLGESPPMRALRGQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRRGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQEISLDVRILSATHRDLAAEVSAGTFRQDLYYRLNVIELQVPALRERREDIGALATH
MLERLARDAGLAPATLGDDALARLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=166875 APT59_RS17895 WP_059316093.1 3927845..3929185(+) (pilR) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGGGCGGATGAA
GCTCGACACCGCCAGCGCCAAGAACATCACCGACGCGCGAGCCATTCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGCCTGCCGGATGGCTCGGGCCTTGAGCTGATCAATTTCATCCAGCAGCGGATGCCGCAATTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGAAACCGCCGTTCAGGCCCTCAAGGCCGGCGCCTTCGACTACCTCACCAAGCCGGTGGA
CCTGCCGCGTCTGCGCGAGCTGGTGGGCACGGCGCTGCGCCTGTCCGGCCCTACCCCGCCAGCACCCGGTGCCAGTGAAA
CCCAGCTGCTGGGCGAATCCCCGCCCATGCGCGCCTTGCGTGGGCAGATCGCCAAGCTCGCCCGCAGTCAGGCGCCGGTC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAGCGCGTGGCACGCCTGATCCACGAGCAGGGTCCGCGCGCGGGTCGGCC
CTTCGTGCCGGTCAACTGTGGCGCCATTCCTTCCGAGTTGGTGGAAAGCGAATTCTTCGGACATCGCAGGGGCAGCTTCA
CCGGCGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTTCTCGACGAGGTGGCCGATCTA
CCGCTGCCGATGCAGGTCAAGCTGTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCAGTAGGCAGCCAGCAGGAAATCAG
CCTGGACGTGCGCATTCTCAGTGCTACCCACAGGGACCTCGCCGCCGAAGTCTCCGCCGGCACCTTTCGCCAGGATCTCT
ACTACCGCCTCAACGTCATCGAGCTGCAGGTGCCTGCCCTGCGCGAACGTCGCGAGGATATCGGCGCCCTGGCCACCCAC
ATGCTCGAACGCCTGGCACGGGATGCGGGGCTCGCCCCGGCTACCCTCGGCGACGATGCCCTGGCCAGACTCAAGAGCTA
TAGATTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAACGGGCCTACACCCTGTGTGAAGGCGATGTCATCCGGC
CGGCCGATCTGCGCCTGGCCGATGCGCCAGCGGCCACCGCTACCGGCGAAGCCAGCCTGGCCAACATCGCCAATCTCGAA
GACCACCTGGAATCCATCGAGCGCCAGCTGATCATGCAGGCACTCGAAGAGACCCGCTGGAATCGCACCGCCGCCGCGGA
GCGCCTGGGCCTCTCCTTCCGTTCGATGCGCTACCGCCTGAAAAAGCTTGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U4VRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.642

100

0.798
  pilR Acinetobacter baumannii strain A118

48.712

100

0.509
  luxO Vibrio cholerae strain A1552

37.557

99.103

0.372

Multiple sequence alignment