Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   APT59_RS17890 Genome accession   NZ_CP013987
Coordinates   3926268..3927842 (+) Length   524 a.a.
NCBI ID   WP_059316092.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921268..3932842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT59_RS17865 (APT59_17865) pgeF 3921272..3922003 (-) 732 WP_059316087.1 peptidoglycan editing factor PgeF -
  APT59_RS17870 (APT59_17870) rluD 3922000..3922959 (-) 960 WP_059316088.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  APT59_RS17875 (APT59_17875) - 3923148..3924173 (+) 1026 WP_059316089.1 outer membrane protein assembly factor BamD -
  APT59_RS17880 (APT59_17880) - 3924282..3925904 (-) 1623 WP_059316090.1 NAD+ synthase -
  APT59_RS17885 (APT59_17885) - 3926036..3926284 (+) 249 WP_059316091.1 PP0621 family protein -
  APT59_RS17890 (APT59_17890) pilS 3926268..3927842 (+) 1575 WP_059316092.1 sensor histidine kinase Regulator
  APT59_RS17895 (APT59_17895) pilR 3927845..3929185 (+) 1341 WP_059316093.1 sigma-54-dependent transcriptional regulator Regulator
  APT59_RS17900 (APT59_17900) - 3929186..3930244 (-) 1059 WP_059316094.1 NAD(P)/FAD-dependent oxidoreductase -
  APT59_RS22270 - 3930386..3930919 (+) 534 WP_082696426.1 GspH/FimT family pseudopilin -
  APT59_RS22275 - 3931016..3931483 (+) 468 WP_082696385.1 GspH/FimT family pseudopilin -
  APT59_RS17910 (APT59_17910) pilV 3931480..3931983 (+) 504 WP_059316096.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57512.19 Da        Isoelectric Point: 7.6180

>NTDB_id=166874 APT59_RS17890 WP_059316092.1 3926268..3927842(+) (pilS) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
MSNAADPGILRADAVLRLYHLYRIVIGLALVVLISNDLDQHWLRTVDGHLFRQASWAYLATNAMLAVGHRLLRGRAFTLA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLANPAARRLLGVDDEDTITPLTLG
LAQRLEEWERNPSIRPAPWRAYANGPLLQPSFAHLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSRRMNRVVENVLQLSRRRQSAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEPGTLQTHMDPHQLGQILTNLVQNGLRYSCQKHGIGQVWLSTYRDPESDLPILEVVDDGPGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=166874 APT59_RS17890 WP_059316092.1 3926268..3927842(+) (pilS) [Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511]
ATGAGCAACGCAGCTGATCCAGGCATCCTGAGAGCCGACGCGGTCCTGCGGCTCTACCACCTCTACCGCATCGTCATCGG
CCTGGCACTGGTGGTGCTGATCTCCAACGACCTGGACCAGCACTGGCTGCGCACCGTTGATGGCCACCTGTTCCGCCAGG
CCAGCTGGGCCTATCTCGCCACCAACGCCATGCTCGCGGTCGGCCATCGACTGCTGCGCGGTCGCGCCTTCACCCTGGCG
TTGATCGATATTCTCGCCCTCGGCGGGCTGTTCTTCCTCGCTGGCGGCATCGCCAGTGGCATGGGCAGCCTGCTGGTGGT
GACCGTCGGGGTGTCCAATGTCCTGATCCGCGGTCGACGCGGCCTGCTGATCGCTGCCCTGGCCGCCATCGCCCTGCTGC
TGGCGACCGGCTATCTCGACCTGCGCCGCGGCGACAGCGGCAGCGGTTACGTCCAGGCGGCTGGCCTGGGCACCCTCTGC
TTCGCCACGGCGCTGCTGGTACAGGGACTGGTCCGGCGCTTGCTGGACAGCCAGGCCCTGGCCGAAACCCGGGCCACCGC
CGTAGCCGAGCTGGAGGCCCTCAACGCTCTCATCCTCGAGCGCATGCGCACCGGCATCCTGGTCTTCGATGCCGAATACC
AGGTGCTGCTGGCCAATCCAGCAGCCCGTCGCCTGCTGGGTGTGGACGACGAAGACACCATCACGCCGCTGACCCTGGGG
CTGGCCCAGCGGCTGGAAGAATGGGAACGCAATCCTAGCATCCGTCCCGCACCCTGGCGCGCCTATGCCAACGGCCCGCT
GCTGCAGCCCAGCTTCGCACACCTGCAGCAGGGCGAAGGCGAGCGGGTCCTGACCTTTCTCGAAGACGTCTCGCGCATCG
CCCAGCAGGCCCAGCAACTCAAGCTCGCCTCCCTTGGCCGCCTCACCGCCGGCATCGCCCACGAGATCCGCAATCCGCTG
GGCGCCATCAGTCATGCGGCGCAATTGCTGCAGGAGTCCGAAGAGCTGACCACGCCGGATCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCGCGGCGGATGAATCGCGTGGTGGAAAACGTCCTGCAGTTGTCCCGCCGCCGGCAGTCGGCGCCGCAGC
TGATCGACCTGCGCTACTGGGCGCACCGCTTCGCCGGTGAGCTGCGCCCTACCCTGCCCGCCGGCCAGACCTTGCACGTC
AAGACCGAGCCCGGCACCCTGCAGACGCACATGGACCCCCACCAGCTGGGCCAGATCCTGACCAACCTGGTGCAGAACGG
CCTGCGCTACAGCTGCCAGAAGCACGGCATCGGCCAGGTCTGGCTGAGCACCTACCGCGACCCGGAAAGCGATCTTCCCA
TCCTCGAAGTGGTCGACGATGGGCCGGGGGTTGCCGCCGAACAGCTCGATCACCTGTTCGAGCCCTTCTTCACCACCGAG
AACAAGGGGACCGGACTTGGCCTGTACATCTCCCGCGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCCTT
GGCGAATGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(304-368)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)

PAS domain (PAS_8)

(198-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.808

99.237

0.594

Multiple sequence alignment