Detailed information NTG0166739

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ATY43_RS18395
• Genome accession: NZ_CP013961
• Coordinates: 3914993..3916051 (-)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain PXO145
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3909993..3921051

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY43_RS25875	-	3910205..3911003 (+)	799	WP_094187728.1	IS5 family transposase	-
ATY43_RS18375 (ATY43_18360)	-	3911074..3913023 (-)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
ATY43_RS18380 (ATY43_18365)	-	3913043..3913576 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
ATY43_RS18385 (ATY43_18370)	-	3913573..3914238 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
ATY43_RS18390 (ATY43_18375)	-	3914235..3914993 (-)	759	WP_044757059.1	PilN domain-containing protein	-
ATY43_RS18395 (ATY43_18380)	comM	3914993..3916051 (-)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
ATY43_RS18400 (ATY43_18385)	-	3916267..3918696 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
ATY43_RS18405 (ATY43_18390)	-	3918764..3919720 (-)	957	WP_041182719.1	IS30-like element IS1112b family transposase	-
ATY43_RS18410 (ATY43_18395)	-	3920065..3920715 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=166739 ATY43_RS18395 WP_011407795.1 3914993..3916051(-) (comM) [Xanthomonas oryzae pv. oryzae strain PXO145]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=166739 ATY43_RS18395 WP_011407795.1 3914993..3916051(-) (comM) [Xanthomonas oryzae pv. oryzae strain PXO145]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477