Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SE1UMMC_RS00265 Genome accession   NZ_CP013943
Coordinates   52704..53213 (+) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain DAR1907     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 47704..58213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1UMMC_RS00235 (SE1UMMC_00215) - 48485..49360 (+) 876 WP_001832526.1 mechanosensitive ion channel family protein -
  SE1UMMC_RS00240 (SE1UMMC_00220) - 49381..49584 (+) 204 WP_001831361.1 DUF951 domain-containing protein -
  SE1UMMC_RS00245 (SE1UMMC_00225) ychF 49596..50693 (+) 1098 WP_101750484.1 redox-regulated ATPase YchF -
  SE1UMMC_RS00250 (SE1UMMC_00230) - 50926..51117 (-) 192 WP_001831355.1 hypothetical protein -
  SE1UMMC_RS00255 (SE1UMMC_00235) - 51191..52000 (-) 810 WP_002455908.1 GH25 family lysozyme -
  SE1UMMC_RS00260 (SE1UMMC_00240) rpsF 52385..52681 (+) 297 WP_001831345.1 30S ribosomal protein S6 -
  SE1UMMC_RS00265 (SE1UMMC_00245) ssbA 52704..53213 (+) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  SE1UMMC_RS00270 (SE1UMMC_00250) rpsR 53258..53500 (+) 243 WP_001831354.1 30S ribosomal protein S18 -
  SE1UMMC_RS14000 - 53684..53856 (-) 173 Protein_50 XRE family transcriptional regulator -
  SE1UMMC_RS00280 (SE1UMMC_00255) - 53970..54230 (-) 261 WP_001830921.1 hypothetical protein -
  SE1UMMC_RS00285 (SE1UMMC_00260) - 54452..54706 (+) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  SE1UMMC_RS14215 - 54926..55015 (-) 90 Protein_53 hypothetical protein -
  SE1UMMC_RS00295 (SE1UMMC_00265) - 55178..55810 (+) 633 WP_001830914.1 LysE family translocator -
  SE1UMMC_RS00300 (SE1UMMC_00270) - 55831..56421 (+) 591 WP_002456826.1 histidine phosphatase family protein -
  SE1UMMC_RS00310 (SE1UMMC_00275) - 56837..57214 (-) 378 WP_002437185.1 hypothetical protein -
  SE1UMMC_RS00320 (SE1UMMC_00280) - 57434..58057 (-) 624 WP_002456828.1 NDxxF motif lipoprotein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=166382 SE1UMMC_RS00265 WP_001831333.1 52704..53213(+) (ssbA) [Staphylococcus epidermidis strain DAR1907]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=166382 SE1UMMC_RS00265 WP_001831333.1 52704..53213(+) (ssbA) [Staphylococcus epidermidis strain DAR1907]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379

Multiple sequence alignment