Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AV939_RS01200 Genome accession   NZ_CP013932
Coordinates   286959..287546 (+) Length   195 a.a.
NCBI ID   WP_057794667.1    Uniprot ID   A0AAW7Z2Q2
Organism   Alteromonas sp. Mac1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 281959..292546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV939_RS01185 (AV939_01185) - 282640..283695 (+) 1056 WP_057794675.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  AV939_RS01190 (AV939_01190) galK 283688..284827 (+) 1140 WP_057794672.1 galactokinase -
  AV939_RS01195 (AV939_01195) - 285098..286660 (+) 1563 WP_057794670.1 sodium/sugar symporter -
  AV939_RS01200 (AV939_01200) ssb 286959..287546 (+) 588 WP_057794667.1 single-stranded DNA-binding protein Machinery gene
  AV939_RS01205 (AV939_01205) - 287704..288474 (-) 771 WP_057794665.1 hypothetical protein -
  AV939_RS01210 (AV939_01210) - 288477..289319 (-) 843 WP_057794663.1 HEAT repeat domain-containing protein -
  AV939_RS01215 (AV939_01215) - 289653..290405 (-) 753 WP_082604989.1 4'-phosphopantetheinyl transferase superfamily protein -
  AV939_RS01220 (AV939_01220) - 290406..291212 (-) 807 WP_082604988.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21302.21 Da        Isoelectric Point: 4.9658

>NTDB_id=166239 AV939_RS01200 WP_057794667.1 286959..287546(+) (ssb) [Alteromonas sp. Mac1]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDPQGQMQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQSGQDRYTTEIIVDQMQMLGGRGGEGGGGNAGGGYQRPQNNQQGGYQQQGGQSQGGYQQQGGQSQGGQNQ
GGYQQQAPNQGGGQSQPKQPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=166239 AV939_RS01200 WP_057794667.1 286959..287546(+) (ssb) [Alteromonas sp. Mac1]
ATGGCAACGAAAGGCGTTAACAAGGTCATACTTGTGGGAAATCTAGGTAATGATCCTGAAGTACGATACATGCCTAACGG
TAACGCCGTTGCGAACCTAAGCTTGGCTACCAGCGAAAGCTGGAAAGATCCGCAAGGCCAAATGCAGGAACGCACTGAGT
GGCACCGCCTTACTATGTACCGTCGCTTAGCAGAAATTGCCGGAGAATACCTGAAGAAGGGTTCTCAAATTTACGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGTCAGGCCAAGACCGTTACACCACAGAAATCATTGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGCGAAGGTGGTGGTGGTAATGCGGGTGGCGGTTATCAACGCCCTCAGAACAACCAGCAAG
GTGGGTATCAGCAACAAGGTGGTCAAAGCCAAGGCGGTTATCAGCAGCAAGGCGGCCAGAGCCAAGGTGGTCAAAATCAA
GGCGGTTATCAACAACAAGCGCCTAACCAAGGCGGTGGTCAGTCACAGCCTAAGCAGCCTCCAATGGCTGAGCCGGACTT
TGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.229

100

0.559
  ssb Vibrio cholerae strain A1552

54.5

100

0.559
  ssb Neisseria meningitidis MC58

49.479

98.462

0.487
  ssb Neisseria gonorrhoeae MS11

49.479

98.462

0.487

Multiple sequence alignment