Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AV941_RS01115 | Genome accession | NZ_CP013930 |
| Coordinates | 250335..250925 (+) | Length | 196 a.a. |
| NCBI ID | WP_012516753.1 | Uniprot ID | F2G3Q0 |
| Organism | Alteromonas mediterranea strain U10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 245335..255925
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AV941_RS01100 (AV941_01105) | - | 245971..247026 (+) | 1056 | WP_012516750.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| AV941_RS01105 (AV941_01110) | galK | 247019..248167 (+) | 1149 | WP_015065961.1 | galactokinase | - |
| AV941_RS01110 (AV941_01115) | - | 248508..250070 (+) | 1563 | WP_015065962.1 | sodium/sugar symporter | - |
| AV941_RS01115 (AV941_01120) | ssb | 250335..250925 (+) | 591 | WP_012516753.1 | single-stranded DNA-binding protein | Machinery gene |
| AV941_RS01120 (AV941_01125) | - | 251194..252093 (+) | 900 | WP_015065963.1 | hypothetical protein | - |
| AV941_RS01125 (AV941_01130) | - | 252310..254886 (-) | 2577 | WP_015065964.1 | hypothetical protein | - |
| AV941_RS01130 (AV941_01135) | galE | 254904..255920 (-) | 1017 | WP_015065965.1 | UDP-glucose 4-epimerase GalE | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21299.23 Da Isoelectric Point: 4.9562
>NTDB_id=166221 AV941_RS01115 WP_012516753.1 250335..250925(+) (ssb) [Alteromonas mediterranea strain U10]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGDGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNQSQ
GQGGGYNQAPQGGNPSQPKTPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 591 bp
>NTDB_id=166221 AV941_RS01115 WP_012516753.1 250335..250925(+) (ssb) [Alteromonas mediterranea strain U10]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACCACTGAAATTATCGTAGATCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAGGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTTTAG
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTACGTAGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGTCAGGATAAGTACACCACTGAAATTATCGTAGATCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGATGGTGGCGGCGGAAACGGCGGTTACCAGCGTCCTCAAAACAACCAAGGCGGTTATA
ATCAAGCGCCAGCGCAAGGTGGTTACAACCAGGCTCCACAACAAGGTGGAGGCCAGCAAGGCGGCTATAACCAGAGCCAG
GGCCAAGGCGGTGGTTATAATCAAGCGCCGCAGGGTGGTAACCCGTCACAGCCTAAGACTCCGCCTATGGCTGAACCAGA
CTTCGATTTTGACGACGATATTCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.571 |
| ssb | Vibrio cholerae strain A1552 |
53.731 |
100 |
0.551 |
| ssb | Neisseria meningitidis MC58 |
46.392 |
98.98 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.392 |
98.98 |
0.459 |