Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A7J08_RS04565 Genome accession   NZ_CP017088
Coordinates   905305..905985 (+) Length   226 a.a.
NCBI ID   WP_148115715.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900305..910985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS04550 (A7J08_04410) - 900819..901802 (-) 984 WP_141604858.1 L-lactate dehydrogenase -
  A7J08_RS04555 (A7J08_04415) gyrA 901991..904435 (+) 2445 WP_148115714.1 DNA gyrase subunit A -
  A7J08_RS04560 (A7J08_04420) - 904442..905191 (+) 750 WP_002935254.1 class A sortase -
  A7J08_RS04565 (A7J08_04425) radC 905305..905985 (+) 681 WP_148115715.1 DNA repair protein RadC Machinery gene
  A7J08_RS04570 (A7J08_04430) - 905982..906674 (-) 693 WP_105256625.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A7J08_RS04575 (A7J08_04435) - 906678..907316 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  A7J08_RS04580 (A7J08_04440) - 907451..907654 (-) 204 WP_024378702.1 DUF4649 family protein -
  A7J08_RS04585 (A7J08_04445) - 907656..908000 (-) 345 WP_024402190.1 DUF1831 domain-containing protein -
  A7J08_RS04590 (A7J08_04450) - 908002..909117 (-) 1116 WP_148115716.1 cysteine desulfurase family protein -
  A7J08_RS04595 (A7J08_04455) - 909129..910106 (-) 978 WP_012775438.1 ribose-phosphate diphosphokinase -
  A7J08_RS04600 (A7J08_04460) - 910251..910817 (-) 567 WP_105135526.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25708.93 Da        Isoelectric Point: 7.9541

>NTDB_id=166023 A7J08_RS04565 WP_148115715.1 905305..905985(+) (radC) [Streptococcus suis strain SRD478]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIAELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=166023 A7J08_RS04565 WP_148115715.1 905305..905985(+) (radC) [Streptococcus suis strain SRD478]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAATTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGCAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCGAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(108-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50

95.575

0.478