Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   A7J08_RS02440 Genome accession   NZ_CP017088
Coordinates   472209..472874 (+) Length   221 a.a.
NCBI ID   WP_053867078.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467209..477874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS02415 (A7J08_02325) - 467420..468820 (+) 1401 WP_053867074.1 Cof-type HAD-IIB family hydrolase -
  A7J08_RS02420 (A7J08_02330) - 468822..469193 (+) 372 WP_024394815.1 S1 RNA-binding domain-containing protein -
  A7J08_RS02425 (A7J08_02335) cysK 469220..470146 (-) 927 WP_053867075.1 cysteine synthase A -
  A7J08_RS02430 (A7J08_02340) - 470235..470867 (-) 633 WP_053867076.1 YigZ family protein -
  A7J08_RS02435 (A7J08_02345) comFA/cflA 470924..472216 (+) 1293 WP_053867077.1 DEAD/DEAH box helicase Machinery gene
  A7J08_RS02440 (A7J08_02350) comFC/cflB 472209..472874 (+) 666 WP_053867078.1 ComF family protein Machinery gene
  A7J08_RS02445 (A7J08_02355) raiA 472951..473493 (+) 543 WP_014637536.1 ribosome-associated translation inhibitor RaiA -
  A7J08_RS02450 (A7J08_02360) - 473634..474764 (+) 1131 WP_053867079.1 ISAs1 family transposase -
  A7J08_RS02455 (A7J08_02365) - 474766..475086 (+) 321 WP_235443470.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25847.69 Da        Isoelectric Point: 8.4541

>NTDB_id=166003 A7J08_RS02440 WP_053867078.1 472209..472874(+) (comFC/cflB) [Streptococcus suis strain SRD478]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQRKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=166003 A7J08_RS02440 WP_053867078.1 472209..472874(+) (comFC/cflB) [Streptococcus suis strain SRD478]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAAGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGTGGGTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATCCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAGATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48