Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BGL51_RS01960 Genome accession   NZ_CP017064
Coordinates   360830..361492 (+) Length   220 a.a.
NCBI ID   WP_095559241.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355830..366492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGL51_RS01935 (BGL51_01980) - 356148..356858 (+) 711 WP_011680767.1 ABC transporter ATP-binding protein -
  BGL51_RS01940 - 356994..357654 (+) 661 Protein_329 CBS and ACT domain-containing protein -
  BGL51_RS01945 (BGL51_01995) cysK 357821..358747 (-) 927 WP_011680768.1 cysteine synthase A -
  BGL51_RS01950 (BGL51_02000) - 358849..359475 (-) 627 WP_011680769.1 YigZ family protein -
  BGL51_RS01955 (BGL51_02005) comFA/cflA 359530..360849 (+) 1320 WP_011680770.1 DEAD/DEAH box helicase Machinery gene
  BGL51_RS01960 (BGL51_02010) comFC/cflB 360830..361492 (+) 663 WP_095559241.1 ComF family protein Machinery gene
  BGL51_RS01965 (BGL51_02015) hpf 361571..362119 (+) 549 WP_095559242.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26036.40 Da        Isoelectric Point: 9.1304

>NTDB_id=165889 BGL51_RS01960 WP_095559241.1 360830..361492(+) (comFC/cflB) [Streptococcus thermophilus strain ST3]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=165889 BGL51_RS01960 WP_095559241.1 360830..361492(+) (comFC/cflB) [Streptococcus thermophilus strain ST3]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441