Detailed information NTG0165765

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: MTVDSCj07_RS06760
• Genome accession: NZ_CP017031
• Coordinates: 1297339..1298346 (+)
• Length: 335 a.a.
• NCBI ID: WP_002856258.1
• Uniprot ID: Q9PMT7
• Organism: Campylobacter jejuni subsp. jejuni strain MTVDSCj07
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1292339..1303346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTVDSCj07_RS06740 (MTVDSCj07_1301)	nrfH	1293606..1294121 (-)	516	WP_010891930.1	cytochrome c nitrite reductase small subunit	-
MTVDSCj07_RS06745 (MTVDSCj07_1302)	ppk	1294286..1296394 (+)	2109	WP_223209681.1	RNA degradosome polyphosphate kinase	-
MTVDSCj07_RS06755 (MTVDSCj07_1304)	-	1296838..1297248 (-)	411	WP_002783915.1	hypothetical protein	-
MTVDSCj07_RS06760 (MTVDSCj07_1305)	ruvB	1297339..1298346 (+)	1008	WP_002856258.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
MTVDSCj07_RS06765 (MTVDSCj07_1306)	amaA	1298350..1299393 (+)	1044	WP_002859651.1	AI-2E family transporter	-
MTVDSCj07_RS06770 (MTVDSCj07_1307)	fumC	1299423..1300814 (-)	1392	WP_002889950.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37311.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=165765 MTVDSCj07_RS06760 WP_002856258.1 1297339..1298346(+) (ruvB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=165765 MTVDSCj07_RS06760 WP_002856258.1 1297339..1298346(+) (ruvB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGAGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• PDB: 3PFI

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.162	99.701	0.69
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Synechocystis sp. PCC 6803	49.221	95.821	0.472
ruvB	Streptococcus pneumoniae TIGR4	48.024	98.209	0.472
ruvB	Streptococcus pneumoniae R6	48.024	98.209	0.472
ruvB	Streptococcus pneumoniae D39	48.024	98.209	0.472