Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BC350_RS04415 | Genome accession | NZ_CP016914 |
| Coordinates | 895304..896377 (+) | Length | 357 a.a. |
| NCBI ID | WP_011000459.1 | Uniprot ID | Q8Y236 |
| Organism | Ralstonia pseudosolanacearum strain CQPS-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 890304..901377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BC350_RS04390 (BC350_04265) | - | 890844..891077 (+) | 234 | WP_011000464.1 | Fis family transcriptional regulator | - |
| BC350_RS04395 (BC350_04270) | purH | 891167..892741 (+) | 1575 | WP_016726645.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| BC350_RS04400 (BC350_04275) | ruvC | 892830..893375 (+) | 546 | WP_016726644.1 | crossover junction endodeoxyribonuclease RuvC | - |
| BC350_RS04405 (BC350_04280) | - | 893471..894607 (+) | 1137 | WP_020831261.1 | glycerophosphodiester phosphodiesterase | - |
| BC350_RS04410 (BC350_04285) | ruvA | 894659..895240 (+) | 582 | WP_019717529.1 | Holliday junction branch migration protein RuvA | - |
| BC350_RS04415 (BC350_04290) | ruvB | 895304..896377 (+) | 1074 | WP_011000459.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BC350_RS04420 (BC350_04295) | - | 896449..897132 (-) | 684 | WP_011000458.1 | histidine phosphatase family protein | - |
| BC350_RS04425 (BC350_04300) | - | 897132..897263 (-) | 132 | WP_058907487.1 | hypothetical protein | - |
| BC350_RS04430 (BC350_04305) | dtd | 897281..897781 (-) | 501 | WP_011000456.1 | D-aminoacyl-tRNA deacylase | - |
| BC350_RS04435 (BC350_04310) | tyrS | 897778..899049 (-) | 1272 | WP_016724018.1 | tyrosine--tRNA ligase | - |
| BC350_RS04440 (BC350_04315) | - | 899224..900384 (+) | 1161 | WP_028852601.1 | anhydro-N-acetylmuramic acid kinase | - |
| BC350_RS04445 (BC350_04320) | erpA | 900448..900822 (-) | 375 | WP_003265486.1 | iron-sulfur cluster insertion protein ErpA | - |
| BC350_RS04450 (BC350_04325) | - | 900951..901355 (-) | 405 | WP_011000453.1 | bactofilin family protein | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39058.85 Da Isoelectric Point: 5.5347
>NTDB_id=165397 BC350_RS04415 WP_011000459.1 895304..896377(+) (ruvB) [Ralstonia pseudosolanacearum strain CQPS-1]
MIETDKLAAKAVSAERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKT
TLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRR
VRDYAEVKADGVITRAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG
YLQRTPRGRVATASAYQHFGLGAPKTGPARDLWDNNA
MIETDKLAAKAVSAERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKT
TLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRR
VRDYAEVKADGVITRAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG
YLQRTPRGRVATASAYQHFGLGAPKTGPARDLWDNNA
Nucleotide
Download Length: 1074 bp
>NTDB_id=165397 BC350_RS04415 WP_011000459.1 895304..896377(+) (ruvB) [Ralstonia pseudosolanacearum strain CQPS-1]
ATGATCGAAACCGACAAGCTCGCCGCCAAGGCCGTCTCCGCCGAACGCCTGATCTCGGCCTCGCCCGCCTCCCCCAACGA
GGAGGCATTCGAGCGCGCGCTGCGCCCCAAGCTGCTCGACGAATACGTCGGCCAGGAAAAGGTGCGCGGCCAGCTCGATA
TCTTCATGACGGCGGCCAAGAAGCGCCGCGAGGCGCTCGACCACGTGCTGCTGTTCGGCCCGCCGGGCCTGGGCAAGACG
ACGCTGGCGCACATCATCGCCCGCGAGATGGGCGTCAACCTGCGCCAGACCTCGGGCCCCGTGCTGGAGCGCCCGGGCGA
CCTGGCCGCGCTGCTGACCAACCTCGAAGCCAACGACGTCCTCTTCATCGACGAGATCCATCGACTCTCGCCGGTGGTGG
AGGAAATCCTGTATCCGGCGCTCGAGGACTACCAGATCGACATCATGATCGGCGAAGGCCCGGCAGCCCGCTCGGTCAAG
CTCGATCTGCAGCCGTTCACGCTGGTGGGCGCCACCACGCGCGCCGGCATGCTGACCAACCCGCTGCGCGACCGCTTCGG
CATCGTCGCCCGGCTCGAGTTCTATACGCCGACGGAGCTCGCGCGCATCGTCACGCGCTCTGCCGGCCTGCTCGACGCGC
GCATCGCCGAAGACGGCGCGCTGGAGATCGCCAAGCGCTCGCGCGGCACGCCCCGCATCGCCAACCGCCTGCTGCGCCGC
GTGCGCGACTACGCTGAAGTGAAAGCCGACGGCGTCATCACCCGCGCGGTGGCCGACGCGGCGCTGGCGATGCTCGACGT
GGATGCGGTCGGCTTCGACCTGATGGACCGCAAGCTGCTGGAAGCCATCCTGCACAAGTTCAACGGCGGCCCGGTCGGCA
TCGACAACCTGGCCGCCGCCATCGGCGAGGAGCGCGACACCATCGAAGACGTGCTCGAGCCCTACCTGATCCAGCAGGGC
TACCTGCAGCGCACGCCGCGCGGGCGCGTCGCCACGGCATCGGCCTACCAGCACTTCGGGCTAGGCGCGCCGAAGACCGG
TCCGGCGCGCGACCTGTGGGACAACAACGCCTAG
ATGATCGAAACCGACAAGCTCGCCGCCAAGGCCGTCTCCGCCGAACGCCTGATCTCGGCCTCGCCCGCCTCCCCCAACGA
GGAGGCATTCGAGCGCGCGCTGCGCCCCAAGCTGCTCGACGAATACGTCGGCCAGGAAAAGGTGCGCGGCCAGCTCGATA
TCTTCATGACGGCGGCCAAGAAGCGCCGCGAGGCGCTCGACCACGTGCTGCTGTTCGGCCCGCCGGGCCTGGGCAAGACG
ACGCTGGCGCACATCATCGCCCGCGAGATGGGCGTCAACCTGCGCCAGACCTCGGGCCCCGTGCTGGAGCGCCCGGGCGA
CCTGGCCGCGCTGCTGACCAACCTCGAAGCCAACGACGTCCTCTTCATCGACGAGATCCATCGACTCTCGCCGGTGGTGG
AGGAAATCCTGTATCCGGCGCTCGAGGACTACCAGATCGACATCATGATCGGCGAAGGCCCGGCAGCCCGCTCGGTCAAG
CTCGATCTGCAGCCGTTCACGCTGGTGGGCGCCACCACGCGCGCCGGCATGCTGACCAACCCGCTGCGCGACCGCTTCGG
CATCGTCGCCCGGCTCGAGTTCTATACGCCGACGGAGCTCGCGCGCATCGTCACGCGCTCTGCCGGCCTGCTCGACGCGC
GCATCGCCGAAGACGGCGCGCTGGAGATCGCCAAGCGCTCGCGCGGCACGCCCCGCATCGCCAACCGCCTGCTGCGCCGC
GTGCGCGACTACGCTGAAGTGAAAGCCGACGGCGTCATCACCCGCGCGGTGGCCGACGCGGCGCTGGCGATGCTCGACGT
GGATGCGGTCGGCTTCGACCTGATGGACCGCAAGCTGCTGGAAGCCATCCTGCACAAGTTCAACGGCGGCCCGGTCGGCA
TCGACAACCTGGCCGCCGCCATCGGCGAGGAGCGCGACACCATCGAAGACGTGCTCGAGCCCTACCTGATCCAGCAGGGC
TACCTGCAGCGCACGCCGCGCGGGCGCGTCGCCACGGCATCGGCCTACCAGCACTTCGGGCTAGGCGCGCCGAAGACCGG
TCCGGCGCGCGACCTGTGGGACAACAACGCCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.538 |
92.717 |
0.58 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.635 |
88.235 |
0.535 |
| ruvB | Streptococcus pneumoniae R6 |
60.635 |
88.235 |
0.535 |
| ruvB | Streptococcus pneumoniae D39 |
60.635 |
88.235 |
0.535 |
| ruvB | Synechocystis sp. PCC 6803 |
51.895 |
96.078 |
0.499 |
| ruvB | Helicobacter pylori 26695 |
55.7 |
85.994 |
0.479 |