Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   BARD7_RS12015 Genome accession   NZ_CP016913
Coordinates   2446947..2447642 (-) Length   231 a.a.
NCBI ID   WP_065981989.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2441947..2452642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS11985 (BARD7_02457) - 2441961..2442764 (-) 804 WP_065981987.1 M23 family metallopeptidase -
  BARD7_RS11990 (BARD7_02458) minD 2442893..2443696 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  BARD7_RS11995 (BARD7_02459) minC 2443699..2444379 (-) 681 WP_013353059.1 septum site-determining protein MinC -
  BARD7_RS12000 (BARD7_02460) mreD 2444433..2444951 (-) 519 WP_065981988.1 rod shape-determining protein MreD -
  BARD7_RS12005 (BARD7_02461) mreC 2444948..2445811 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BARD7_RS12010 (BARD7_02462) mreB 2445842..2446855 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  BARD7_RS12015 (BARD7_02463) ysxA/radC 2446947..2447642 (-) 696 WP_065981989.1 RadC family protein Machinery gene
  BARD7_RS12020 (BARD7_02464) - 2447674..2448243 (-) 570 WP_065981990.1 Maf family protein -
  BARD7_RS12025 (BARD7_02465) - 2448385..2449386 (-) 1002 WP_065981991.1 SPOR domain-containing protein -
  BARD7_RS12030 (BARD7_02466) comC 2449513..2450265 (-) 753 WP_065981992.1 prepilin peptidase Machinery gene
  BARD7_RS12035 (BARD7_02467) - 2450404..2451696 (-) 1293 WP_065981993.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26052.26 Da        Isoelectric Point: 8.9381

>NTDB_id=165341 BARD7_RS12015 WP_065981989.1 2446947..2447642(-) (ysxA/radC) [Bacillus amyloliquefaciens strain RD7-7]
MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=165341 BARD7_RS12015 WP_065981989.1 2446947..2447642(-) (ysxA/radC) [Bacillus amyloliquefaciens strain RD7-7]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTGCGG
GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATCCTGCTGAGGACGGGAACGAAACATGAGTCCGTCATGAATCTCT
CTCACCGGCTGCTGAGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCTTCTGCTCAGGAGCTTTCCAGCATCCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA
TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

88.312

100

0.883
  radC Streptococcus pneumoniae TIGR4

49.048

90.909

0.446
  radC Streptococcus pneumoniae R6

48.571

90.909

0.442
  radC Streptococcus pneumoniae D39

48.571

90.909

0.442
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424