Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | AOX59_RS18260 | Genome accession | NZ_CP013862 |
| Coordinates | 3710671..3711795 (+) | Length | 374 a.a. |
| NCBI ID | WP_237049324.1 | Uniprot ID | - |
| Organism | Lentibacillus amyloliquefaciens strain LAM0015 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3705671..3716795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOX59_RS18235 (AOX59_18210) | nagB | 3705820..3706545 (+) | 726 | WP_068447750.1 | glucosamine-6-phosphate deaminase | - |
| AOX59_RS18240 (AOX59_18215) | - | 3706581..3707212 (-) | 632 | Protein_3692 | YigZ family protein | - |
| AOX59_RS18245 (AOX59_18220) | - | 3707433..3708587 (+) | 1155 | WP_068447752.1 | sensor histidine kinase | - |
| AOX59_RS18250 (AOX59_18225) | - | 3708683..3709375 (+) | 693 | WP_068447755.1 | response regulator | - |
| AOX59_RS18255 (AOX59_18230) | - | 3709500..3710345 (+) | 846 | WP_068447759.1 | DegV family protein | - |
| AOX59_RS18260 (AOX59_18235) | comFA | 3710671..3711795 (+) | 1125 | WP_237049324.1 | DEAD/DEAH box helicase | Machinery gene |
| AOX59_RS18265 (AOX59_18240) | - | 3711797..3712477 (+) | 681 | WP_068447764.1 | ComF family protein | - |
| AOX59_RS19895 | - | 3712656..3712814 (+) | 159 | WP_156418752.1 | hypothetical protein | - |
| AOX59_RS18270 (AOX59_18245) | hpf | 3713054..3713611 (+) | 558 | WP_068447766.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| AOX59_RS19900 | - | 3713928..3714083 (+) | 156 | WP_156418753.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 42465.80 Da Isoelectric Point: 9.3370
>NTDB_id=165320 AOX59_RS18260 WP_237049324.1 3710671..3711795(+) (comFA) [Lentibacillus amyloliquefaciens strain LAM0015]
MGRVMECLSLYEWTGHDYQWPSHTDACTWTGNLTAAQQKASNQITEAISHSRKELLIWAVCGAGKTEMLYPGIAEALKLR
KRICIATPRADVVRELLPRLRAAFSDIYIQGLYGGSLEKDGTAQLIIATTHQLLRYSNAFDVMIIDEVDAFPYTKDPTLP
FTTERARNKTGTTIYLTATPRKDYKRRMTEKKLPYLFVPRRFHNHPLPVPSLQMCFSLKKNLANSQLPDPFYKWFSRRKN
AYRQLLIFVPTISLAETMTQKLANRLSQFDIMAVHASDENREEKVQAFRDKQYQILVTTTILERGVTFPSVDVAVLDAGH
TVFDEAALVQIAGRAGRSPDDPDGEVVFFHDGKTEAMTEAVRSIIKMNKRGGFH
MGRVMECLSLYEWTGHDYQWPSHTDACTWTGNLTAAQQKASNQITEAISHSRKELLIWAVCGAGKTEMLYPGIAEALKLR
KRICIATPRADVVRELLPRLRAAFSDIYIQGLYGGSLEKDGTAQLIIATTHQLLRYSNAFDVMIIDEVDAFPYTKDPTLP
FTTERARNKTGTTIYLTATPRKDYKRRMTEKKLPYLFVPRRFHNHPLPVPSLQMCFSLKKNLANSQLPDPFYKWFSRRKN
AYRQLLIFVPTISLAETMTQKLANRLSQFDIMAVHASDENREEKVQAFRDKQYQILVTTTILERGVTFPSVDVAVLDAGH
TVFDEAALVQIAGRAGRSPDDPDGEVVFFHDGKTEAMTEAVRSIIKMNKRGGFH
Nucleotide
Download Length: 1125 bp
>NTDB_id=165320 AOX59_RS18260 WP_237049324.1 3710671..3711795(+) (comFA) [Lentibacillus amyloliquefaciens strain LAM0015]
ATGGGCCGGGTCATGGAATGCTTATCATTATATGAATGGACAGGTCATGATTACCAATGGCCAAGTCACACGGATGCCTG
TACATGGACGGGAAACTTGACCGCAGCGCAGCAGAAAGCGTCGAATCAAATAACCGAAGCCATTAGCCACAGTAGAAAAG
AGCTCCTCATATGGGCGGTTTGTGGTGCCGGTAAAACAGAGATGCTTTATCCCGGCATAGCCGAAGCCCTTAAACTTAGA
AAAAGAATATGCATTGCCACACCGAGGGCAGATGTGGTGAGGGAATTATTGCCAAGGCTGCGCGCGGCATTTTCCGATAT
TTATATCCAAGGCTTGTATGGCGGAAGTCTGGAAAAAGACGGAACAGCTCAGCTTATTATCGCAACAACTCATCAGCTGT
TGCGTTACAGTAATGCATTCGATGTCATGATTATTGATGAGGTTGACGCATTTCCGTATACAAAAGACCCAACCCTCCCA
TTTACCACCGAGCGCGCCAGAAACAAAACCGGTACGACGATTTATTTAACAGCCACCCCCAGGAAAGACTATAAGAGACG
AATGACGGAAAAGAAACTGCCTTATTTATTTGTCCCCAGACGTTTTCATAACCATCCATTGCCAGTACCCAGCCTGCAAA
TGTGTTTTTCATTAAAGAAAAACCTAGCGAATTCTCAGCTTCCTGACCCATTTTATAAATGGTTTTCCCGGCGCAAGAAC
GCTTATCGGCAATTGCTCATATTTGTTCCGACCATCAGCCTGGCCGAAACCATGACGCAAAAACTAGCAAACCGTCTCTC
TCAATTTGATATTATGGCAGTCCATGCTTCTGATGAGAACCGGGAGGAAAAAGTTCAGGCCTTTCGGGATAAACAATACC
AAATACTTGTTACAACCACCATTTTGGAGCGTGGGGTGACTTTTCCATCGGTGGATGTGGCGGTTCTTGACGCAGGTCAC
ACGGTTTTTGATGAAGCAGCACTTGTACAAATTGCCGGCAGAGCAGGCAGAAGCCCGGATGATCCGGATGGAGAAGTTGT
TTTCTTCCATGACGGGAAAACTGAAGCAATGACAGAAGCGGTCAGATCCATTATCAAAATGAACAAGCGGGGAGGGTTTC
ACTAG
ATGGGCCGGGTCATGGAATGCTTATCATTATATGAATGGACAGGTCATGATTACCAATGGCCAAGTCACACGGATGCCTG
TACATGGACGGGAAACTTGACCGCAGCGCAGCAGAAAGCGTCGAATCAAATAACCGAAGCCATTAGCCACAGTAGAAAAG
AGCTCCTCATATGGGCGGTTTGTGGTGCCGGTAAAACAGAGATGCTTTATCCCGGCATAGCCGAAGCCCTTAAACTTAGA
AAAAGAATATGCATTGCCACACCGAGGGCAGATGTGGTGAGGGAATTATTGCCAAGGCTGCGCGCGGCATTTTCCGATAT
TTATATCCAAGGCTTGTATGGCGGAAGTCTGGAAAAAGACGGAACAGCTCAGCTTATTATCGCAACAACTCATCAGCTGT
TGCGTTACAGTAATGCATTCGATGTCATGATTATTGATGAGGTTGACGCATTTCCGTATACAAAAGACCCAACCCTCCCA
TTTACCACCGAGCGCGCCAGAAACAAAACCGGTACGACGATTTATTTAACAGCCACCCCCAGGAAAGACTATAAGAGACG
AATGACGGAAAAGAAACTGCCTTATTTATTTGTCCCCAGACGTTTTCATAACCATCCATTGCCAGTACCCAGCCTGCAAA
TGTGTTTTTCATTAAAGAAAAACCTAGCGAATTCTCAGCTTCCTGACCCATTTTATAAATGGTTTTCCCGGCGCAAGAAC
GCTTATCGGCAATTGCTCATATTTGTTCCGACCATCAGCCTGGCCGAAACCATGACGCAAAAACTAGCAAACCGTCTCTC
TCAATTTGATATTATGGCAGTCCATGCTTCTGATGAGAACCGGGAGGAAAAAGTTCAGGCCTTTCGGGATAAACAATACC
AAATACTTGTTACAACCACCATTTTGGAGCGTGGGGTGACTTTTCCATCGGTGGATGTGGCGGTTCTTGACGCAGGTCAC
ACGGTTTTTGATGAAGCAGCACTTGTACAAATTGCCGGCAGAGCAGGCAGAAGCCCGGATGATCCGGATGGAGAAGTTGT
TTTCTTCCATGACGGGAAAACTGAAGCAATGACAGAAGCGGTCAGATCCATTATCAAAATGAACAAGCGGGGAGGGTTTC
ACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
49.459 |
98.93 |
0.489 |
| comFA | Lactococcus lactis subsp. cremoris KW2 |
40.8 |
100 |
0.409 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
43.228 |
92.781 |
0.401 |
| comFA/cflA | Streptococcus mitis NCTC 12261 |
39.142 |
99.733 |
0.39 |
| comFA/cflA | Streptococcus pneumoniae D39 |
38.874 |
99.733 |
0.388 |
| comFA/cflA | Streptococcus pneumoniae R6 |
38.874 |
99.733 |
0.388 |
| comFA/cflA | Streptococcus pneumoniae Rx1 |
38.874 |
99.733 |
0.388 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
38.606 |
99.733 |
0.385 |
| comFA/cflA | Streptococcus mitis SK321 |
38.606 |
99.733 |
0.385 |