Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BEN15_RS04970 Genome accession   NZ_CP016877
Coordinates   927637..928299 (+) Length   220 a.a.
NCBI ID   WP_011680771.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 922637..933299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS04940 (BEN15_04940) - 922955..923665 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  BEN15_RS10340 - 923801..924461 (+) 661 Protein_902 CBS and ACT domain-containing protein -
  BEN15_RS04955 (BEN15_04955) cysK 924628..925554 (-) 927 WP_011680768.1 cysteine synthase A -
  BEN15_RS04960 (BEN15_04960) - 925656..926282 (-) 627 WP_011225515.1 YigZ family protein -
  BEN15_RS04965 (BEN15_04965) comFA/cflA 926337..927656 (+) 1320 WP_065972935.1 DEAD/DEAH box helicase Machinery gene
  BEN15_RS04970 (BEN15_04970) comFC/cflB 927637..928299 (+) 663 WP_011680771.1 ComF family protein Machinery gene
  BEN15_RS04975 (BEN15_04975) hpf 928378..928926 (+) 549 WP_065972936.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26051.42 Da        Isoelectric Point: 8.9833

>NTDB_id=165049 BEN15_RS04970 WP_011680771.1 927637..928299(+) (comFC/cflB) [Streptococcus thermophilus strain KLDS 3.1003]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLEDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=165049 BEN15_RS04970 WP_011680771.1 927637..928299(+) (comFC/cflB) [Streptococcus thermophilus strain KLDS 3.1003]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCGAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGAGGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445