Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BE842_RS03175 Genome accession   NZ_CP016870
Coordinates   688797..689807 (+) Length   336 a.a.
NCBI ID   WP_011215500.1    Uniprot ID   Q5WWK4
Organism   Legionella pneumophila subsp. pneumophila strain FFI103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683797..694807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE842_RS03150 (BE842_03150) - 685668..686216 (+) 549 WP_011215496.1 cytochrome b -
  BE842_RS03155 (BE842_03155) - 686247..687236 (-) 990 WP_041173760.1 YgfZ/GcvT domain-containing protein -
  BE842_RS03160 (BE842_03160) - 687362..687601 (+) 240 WP_011215498.1 succinate dehydrogenase assembly factor 2 -
  BE842_RS03165 (BE842_03165) - 687543..687986 (+) 444 WP_041173761.1 lpg1578 family Dot/Icm T4SS effector -
  BE842_RS03170 (BE842_03170) - 688087..688650 (+) 564 WP_011215499.1 sigma-70 family RNA polymerase sigma factor -
  BE842_RS03175 (BE842_03175) ruvB 688797..689807 (+) 1011 WP_011215500.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BE842_RS03180 (BE842_03180) ybgC 689811..690206 (+) 396 WP_010947304.1 tol-pal system-associated acyl-CoA thioesterase -
  BE842_RS03185 (BE842_03185) tolQ 690231..690908 (+) 678 WP_011946571.1 protein TolQ -
  BE842_RS03190 (BE842_03190) tolR 690917..691372 (+) 456 WP_010947302.1 protein TolR -
  BE842_RS03195 (BE842_03195) tolA 691369..692367 (+) 999 WP_011215501.1 cell envelope integrity protein TolA -
  BE842_RS03200 (BE842_03200) tolB 692373..693632 (+) 1260 WP_011215502.1 Tol-Pal system beta propeller repeat protein TolB -
  BE842_RS03205 (BE842_03205) - 693635..694474 (+) 840 WP_011215503.1 S1/P1 nuclease -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37090.60 Da        Isoelectric Point: 5.2639

>NTDB_id=164670 BE842_RS03175 WP_011215500.1 688797..689807(+) (ruvB) [Legionella pneumophila subsp. pneumophila strain FFI103]
MLESDRLISSQSIVSEDAMDRAIRPLSLSEYVGQDSVSSQMQIFINAARKRNDPLDHVLIFGPPGLGKTTLANIIAHEMG
VNIRQTSGPVIERAGDIAAILTNLQQNDVLFIDEIHRLSPVIEEILYPAMEDYKLDIMIGEGPAARSIKLELPPFTLIGA
TTRAGLLTSPLRDRFGIVQRLEYYSVDSLTQIVARSAHLLGVPTKPEGAREVALRSRGTPRIANRLLRRVRDYSEVKGNG
IITVDMAQQALEMLEVDQHGFDLMDRKLLLAVIEHFNGGPVGIDSIAAAIGEEKGTIEDVLEPFLIQQGFLMRTPRGRIA
TSKAYQHFGFSAIEQE

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=164670 BE842_RS03175 WP_011215500.1 688797..689807(+) (ruvB) [Legionella pneumophila subsp. pneumophila strain FFI103]
ATGCTCGAAAGTGATCGCCTAATAAGTAGTCAAAGTATTGTCTCGGAAGACGCAATGGATAGAGCCATCAGGCCGCTTAG
CTTGAGCGAGTACGTAGGGCAAGATTCTGTTAGCTCACAGATGCAGATATTTATCAATGCAGCAAGAAAGAGAAACGATC
CTTTGGATCATGTTCTTATTTTTGGCCCACCTGGCCTTGGTAAAACTACCCTTGCAAATATCATAGCTCACGAAATGGGA
GTGAATATCCGACAAACTTCTGGGCCAGTGATTGAGCGTGCTGGAGATATTGCTGCTATATTGACGAATCTACAACAAAA
TGATGTACTATTTATTGATGAAATTCATAGATTAAGTCCTGTTATAGAAGAAATTCTTTATCCAGCCATGGAAGATTATA
AGTTGGATATCATGATAGGCGAGGGGCCAGCAGCACGATCTATTAAATTGGAGTTACCTCCCTTTACATTAATTGGAGCA
ACGACGAGAGCAGGGTTGCTTACCTCGCCATTAAGGGATAGATTTGGTATAGTGCAACGTTTGGAATATTATTCTGTTGA
TTCGCTTACCCAGATTGTGGCACGCTCCGCGCATTTGCTTGGTGTCCCTACAAAACCCGAAGGAGCCAGAGAAGTTGCAT
TACGCTCCAGAGGAACACCACGAATAGCCAATCGCCTGTTAAGAAGAGTCAGGGATTATTCTGAAGTGAAAGGAAATGGC
ATCATTACTGTTGATATGGCCCAACAAGCATTGGAAATGCTTGAAGTGGATCAGCACGGGTTTGATTTAATGGATAGAAA
ATTATTGTTAGCGGTAATAGAACACTTCAATGGTGGTCCAGTAGGCATAGATAGTATTGCAGCCGCTATTGGCGAAGAAA
AAGGAACTATAGAAGATGTTTTAGAGCCATTTTTAATACAACAAGGCTTTCTAATGCGCACTCCTCGCGGTAGAATAGCC
ACTTCGAAAGCTTATCAGCATTTTGGCTTTAGTGCGATCGAACAGGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WWK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.061

97.619

0.586
  ruvB Streptococcus pneumoniae TIGR4

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae R6

56.667

98.214

0.557
  ruvB Streptococcus pneumoniae D39

56.667

98.214

0.557
  ruvB Helicobacter pylori 26695

52.484

95.833

0.503
  ruvB Synechocystis sp. PCC 6803

53.548

92.262

0.494