Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RD2015_RS23320 | Genome accession | NZ_CP013729 |
| Coordinates | 5474776..5475330 (-) | Length | 184 a.a. |
| NCBI ID | WP_058936940.1 | Uniprot ID | A0A0U3E6X4 |
| Organism | Roseateles depolymerans strain KCTC 42856 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5469776..5480330
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RD2015_RS23295 (RD2015_4663) | - | 5470773..5471141 (-) | 369 | WP_058936935.1 | hypothetical protein | - |
| RD2015_RS25425 (RD2015_4664) | - | 5471244..5471999 (-) | 756 | WP_058936936.1 | hypothetical protein | - |
| RD2015_RS23305 (RD2015_4665) | - | 5472089..5472604 (-) | 516 | WP_232309876.1 | hypothetical protein | - |
| RD2015_RS23310 (RD2015_4666) | - | 5473018..5474094 (+) | 1077 | WP_058936938.1 | helix-turn-helix domain-containing protein | - |
| RD2015_RS23315 (RD2015_4667) | - | 5474122..5474625 (-) | 504 | WP_058936939.1 | hypothetical protein | - |
| RD2015_RS23320 (RD2015_4668) | ssb | 5474776..5475330 (-) | 555 | WP_058936940.1 | single-stranded DNA-binding protein | Machinery gene |
| RD2015_RS23325 (RD2015_4669) | - | 5475519..5476499 (-) | 981 | WP_058936941.1 | sensor domain-containing diguanylate cyclase | - |
| RD2015_RS23330 (RD2015_4670) | recQ | 5476611..5478479 (+) | 1869 | WP_058936942.1 | DNA helicase RecQ | - |
| RD2015_RS23335 (RD2015_4671) | - | 5478636..5478953 (-) | 318 | WP_058936943.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 19838.82 Da Isoelectric Point: 5.4230
>NTDB_id=164535 RD2015_RS23320 WP_058936940.1 5474776..5475330(-) (ssb) [Roseateles depolymerans strain KCTC 42856]
MASVNKVIILGNLGRDPELRYTPSGSAVCNVSIATTRNWKSREGGERQEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKEGKDNYTTEIIAETMQLLGGRDGGDDMGGGGGGGYNRERSSGGSRESSGGGSGRDAGDFDSPRAPAPRSA
PRPAPAPAAKPATGFDDMDDDIPF
MASVNKVIILGNLGRDPELRYTPSGSAVCNVSIATTRNWKSREGGERQEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKEGKDNYTTEIIAETMQLLGGRDGGDDMGGGGGGGYNRERSSGGSRESSGGGSGRDAGDFDSPRAPAPRSA
PRPAPAPAAKPATGFDDMDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=164535 RD2015_RS23320 WP_058936940.1 5474776..5475330(-) (ssb) [Roseateles depolymerans strain KCTC 42856]
ATGGCCTCGGTCAACAAAGTCATCATCCTCGGCAATCTCGGCCGTGACCCTGAACTGCGCTACACCCCCAGCGGCAGCGC
GGTGTGCAATGTGAGCATCGCCACCACCCGCAACTGGAAGAGCCGCGAAGGCGGCGAGCGCCAGGAAGAGACCGAATGGC
ACCGTGTGGTGTTCTACGACCGTCTGGCAGAGATCGCGGGTGAATATCTCAAGAAGGGCCGCCCGGTGTATGTGGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCAAGGACAACTACACCACCGAAATCATTGCCGAAACCATGCAGCT
GCTGGGCGGCCGTGATGGTGGCGACGACATGGGCGGCGGCGGTGGCGGCGGTTACAACCGCGAGCGTTCTTCCGGCGGCA
GCCGTGAGAGCAGCGGCGGCGGCAGCGGCCGTGACGCGGGTGATTTCGACAGCCCGCGCGCACCGGCGCCCCGCAGCGCA
CCGCGTCCTGCACCGGCTCCGGCGGCCAAGCCGGCCACGGGGTTTGACGATATGGATGACGACATCCCGTTCTGA
ATGGCCTCGGTCAACAAAGTCATCATCCTCGGCAATCTCGGCCGTGACCCTGAACTGCGCTACACCCCCAGCGGCAGCGC
GGTGTGCAATGTGAGCATCGCCACCACCCGCAACTGGAAGAGCCGCGAAGGCGGCGAGCGCCAGGAAGAGACCGAATGGC
ACCGTGTGGTGTTCTACGACCGTCTGGCAGAGATCGCGGGTGAATATCTCAAGAAGGGCCGCCCGGTGTATGTGGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCAAGGACAACTACACCACCGAAATCATTGCCGAAACCATGCAGCT
GCTGGGCGGCCGTGATGGTGGCGACGACATGGGCGGCGGCGGTGGCGGCGGTTACAACCGCGAGCGTTCTTCCGGCGGCA
GCCGTGAGAGCAGCGGCGGCGGCAGCGGCCGTGACGCGGGTGATTTCGACAGCCCGCGCGCACCGGCGCCCCGCAGCGCA
CCGCGTCCTGCACCGGCTCCGGCGGCCAAGCCGGCCACGGGGTTTGACGATATGGATGACGACATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
48.108 |
100 |
0.484 |
| ssb | Neisseria gonorrhoeae MS11 |
47.568 |
100 |
0.478 |
| ssb | Vibrio cholerae strain A1552 |
44.33 |
100 |
0.467 |