Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AVM03_RS13685 Genome accession   NZ_CP013727
Coordinates   2867201..2867719 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2862201..2872719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS13655 (AVM03_13645) - 2863401..2863781 (-) 381 WP_058906501.1 VOC family protein -
  AVM03_RS13660 (AVM03_13650) - 2863838..2864776 (-) 939 WP_024086045.1 LacI family DNA-binding transcriptional regulator -
  AVM03_RS13665 (AVM03_13655) xth 2864839..2865597 (-) 759 WP_058906502.1 exodeoxyribonuclease III -
  AVM03_RS13670 (AVM03_13660) - 2865594..2866151 (-) 558 WP_014306207.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AVM03_RS13675 (AVM03_13665) - 2866148..2866729 (-) 582 WP_044052734.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  AVM03_RS13680 (AVM03_13670) rpsR 2866918..2867157 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  AVM03_RS13685 (AVM03_13675) ssbA 2867201..2867719 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  AVM03_RS13690 (AVM03_13680) rpsF 2867759..2868046 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  AVM03_RS13695 (AVM03_13685) ychF 2868158..2869258 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  AVM03_RS13700 (AVM03_13690) - 2869385..2871388 (-) 2004 WP_058906503.1 molybdopterin-dependent oxidoreductase -
  AVM03_RS13705 (AVM03_13695) - 2871435..2871641 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=164500 AVM03_RS13685 WP_004392979.1 2867201..2867719(-) (ssbA) [Bacillus amyloliquefaciens strain MBE1283]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=164500 AVM03_RS13685 WP_004392979.1 2867201..2867719(-) (ssbA) [Bacillus amyloliquefaciens strain MBE1283]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment