Detailed information NTG0164493

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: AVM03_RS11155
• Genome accession: NZ_CP013727
• Coordinates: 2350837..2352000 (-)
• Length: 387 a.a.
• NCBI ID: WP_003151385.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2345837..2357000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS11125 (AVM03_11115)	-	2346102..2346521 (-)	420	WP_058906393.1	TIGR03826 family flagellar region protein	-
AVM03_RS11130 (AVM03_11120)	comFC	2346595..2347284 (-)	690	WP_196479391.1	ComF family protein	Machinery gene
AVM03_RS11135 (AVM03_11125)	-	2347290..2347574 (-)	285	WP_003151389.1	late competence development ComFB family protein	-
AVM03_RS11140 (AVM03_11130)	comFA	2347632..2349017 (-)	1386	WP_058906395.1	DEAD/DEAH box helicase	Machinery gene
AVM03_RS11145 (AVM03_11135)	-	2349125..2349973 (-)	849	WP_058906396.1	DegV family protein	-
AVM03_RS11150 (AVM03_11140)	degU	2350071..2350760 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
AVM03_RS11155 (AVM03_11145)	degS	2350837..2352000 (-)	1164	WP_003151385.1	two-component sensor histidine kinase DegS	Regulator
AVM03_RS11160 (AVM03_11150)	-	2352223..2352870 (+)	648	WP_003151384.1	YigZ family protein	-
AVM03_RS11165 (AVM03_11155)	-	2352875..2354089 (+)	1215	WP_003151383.1	LCP family protein	-
AVM03_RS11170 (AVM03_11160)	-	2354179..2355255 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
AVM03_RS11175 (AVM03_11165)	tuaH	2355388..2356584 (-)	1197	WP_058906397.1	teichuronic acid biosynthesis protein TuaH	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.82 Da
• Isoelectric Point: 7.1378

>NTDB_id=164493 AVM03_RS11155 WP_003151385.1 2350837..2352000(-) (degS) [Bacillus amyloliquefaciens strain MBE1283]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=164493 AVM03_RS11155 WP_003151385.1 2350837..2352000(-) (degS) [Bacillus amyloliquefaciens strain MBE1283]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTGAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGACGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948