Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AVM03_RS11140 Genome accession   NZ_CP013727
Coordinates   2347632..2349017 (-) Length   461 a.a.
NCBI ID   WP_058906395.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2342632..2354017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS11105 (AVM03_11095) flgL 2342807..2343724 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AVM03_RS11110 (AVM03_11100) flgK 2343736..2345253 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  AVM03_RS11115 (AVM03_11105) - 2345269..2345751 (-) 483 WP_058906392.1 flagellar protein FlgN -
  AVM03_RS11120 (AVM03_11110) flgM 2345766..2346032 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AVM03_RS11125 (AVM03_11115) - 2346102..2346521 (-) 420 WP_058906393.1 TIGR03826 family flagellar region protein -
  AVM03_RS11130 (AVM03_11120) comFC 2346595..2347284 (-) 690 WP_196479391.1 ComF family protein Machinery gene
  AVM03_RS11135 (AVM03_11125) - 2347290..2347574 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AVM03_RS11140 (AVM03_11130) comFA 2347632..2349017 (-) 1386 WP_058906395.1 DEAD/DEAH box helicase Machinery gene
  AVM03_RS11145 (AVM03_11135) - 2349125..2349973 (-) 849 WP_058906396.1 DegV family protein -
  AVM03_RS11150 (AVM03_11140) degU 2350071..2350760 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AVM03_RS11155 (AVM03_11145) degS 2350837..2352000 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AVM03_RS11160 (AVM03_11150) - 2352223..2352870 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52471.91 Da        Isoelectric Point: 10.0900

>NTDB_id=164491 AVM03_RS11140 WP_058906395.1 2347632..2349017(-) (comFA) [Bacillus amyloliquefaciens strain MBE1283]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIKF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALIYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPHFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=164491 AVM03_RS11140 WP_058906395.1 2347632..2349017(-) (comFA) [Bacillus amyloliquefaciens strain MBE1283]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCAAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTTGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTATTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCATTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment