Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AVM03_RS11150 Genome accession   NZ_CP013727
Coordinates   2350071..2350760 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345071..2355760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS11115 (AVM03_11105) - 2345269..2345751 (-) 483 WP_058906392.1 flagellar protein FlgN -
  AVM03_RS11120 (AVM03_11110) flgM 2345766..2346032 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AVM03_RS11125 (AVM03_11115) - 2346102..2346521 (-) 420 WP_058906393.1 TIGR03826 family flagellar region protein -
  AVM03_RS11130 (AVM03_11120) comFC 2346595..2347284 (-) 690 WP_196479391.1 ComF family protein Machinery gene
  AVM03_RS11135 (AVM03_11125) - 2347290..2347574 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AVM03_RS11140 (AVM03_11130) comFA 2347632..2349017 (-) 1386 WP_058906395.1 DEAD/DEAH box helicase Machinery gene
  AVM03_RS11145 (AVM03_11135) - 2349125..2349973 (-) 849 WP_058906396.1 DegV family protein -
  AVM03_RS11150 (AVM03_11140) degU 2350071..2350760 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AVM03_RS11155 (AVM03_11145) degS 2350837..2352000 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AVM03_RS11160 (AVM03_11150) - 2352223..2352870 (+) 648 WP_003151384.1 YigZ family protein -
  AVM03_RS11165 (AVM03_11155) - 2352875..2354089 (+) 1215 WP_003151383.1 LCP family protein -
  AVM03_RS11170 (AVM03_11160) - 2354179..2355255 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=164492 AVM03_RS11150 WP_003219701.1 2350071..2350760(-) (degU) [Bacillus amyloliquefaciens strain MBE1283]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=164492 AVM03_RS11150 WP_003219701.1 2350071..2350760(-) (degU) [Bacillus amyloliquefaciens strain MBE1283]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment