Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AVM03_RS11130 Genome accession   NZ_CP013727
Coordinates   2346595..2347284 (-) Length   229 a.a.
NCBI ID   WP_196479391.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2341595..2352284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS11095 (AVM03_11085) fliW 2341686..2342117 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  AVM03_RS11100 (AVM03_11090) - 2342147..2342716 (-) 570 WP_024085861.1 DUF6470 family protein -
  AVM03_RS11105 (AVM03_11095) flgL 2342807..2343724 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AVM03_RS11110 (AVM03_11100) flgK 2343736..2345253 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  AVM03_RS11115 (AVM03_11105) - 2345269..2345751 (-) 483 WP_058906392.1 flagellar protein FlgN -
  AVM03_RS11120 (AVM03_11110) flgM 2345766..2346032 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AVM03_RS11125 (AVM03_11115) - 2346102..2346521 (-) 420 WP_058906393.1 TIGR03826 family flagellar region protein -
  AVM03_RS11130 (AVM03_11120) comFC 2346595..2347284 (-) 690 WP_196479391.1 ComF family protein Machinery gene
  AVM03_RS11135 (AVM03_11125) - 2347290..2347574 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AVM03_RS11140 (AVM03_11130) comFA 2347632..2349017 (-) 1386 WP_058906395.1 DEAD/DEAH box helicase Machinery gene
  AVM03_RS11145 (AVM03_11135) - 2349125..2349973 (-) 849 WP_058906396.1 DegV family protein -
  AVM03_RS11150 (AVM03_11140) degU 2350071..2350760 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AVM03_RS11155 (AVM03_11145) degS 2350837..2352000 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25317.99 Da        Isoelectric Point: 8.2933

>NTDB_id=164490 AVM03_RS11130 WP_196479391.1 2346595..2347284(-) (comFC) [Bacillus amyloliquefaciens strain MBE1283]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTERRFLLWQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=164490 AVM03_RS11130 WP_196479391.1 2346595..2347284(-) (comFC) [Bacillus amyloliquefaciens strain MBE1283]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAGGCGCTTTTTGCTGTGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment