Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AVM03_RS06095 Genome accession   NZ_CP013727
Coordinates   1379495..1379830 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374495..1384830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS06075 (AVM03_06070) gcvT 1375106..1376206 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  AVM03_RS06080 (AVM03_06075) - 1376629..1378299 (+) 1671 WP_058906183.1 DEAD/DEAH box helicase -
  AVM03_RS06085 (AVM03_06080) - 1378317..1379111 (+) 795 WP_014305407.1 YqhG family protein -
  AVM03_RS06090 (AVM03_06085) sinI 1379288..1379461 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  AVM03_RS06095 (AVM03_06090) sinR 1379495..1379830 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AVM03_RS06100 (AVM03_06095) tasA 1379878..1380663 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  AVM03_RS06105 (AVM03_06100) sipW 1380727..1381311 (-) 585 WP_012117977.1 signal peptidase I SipW -
  AVM03_RS06110 (AVM03_06105) tapA 1381283..1381954 (-) 672 WP_058906184.1 amyloid fiber anchoring/assembly protein TapA -
  AVM03_RS06115 (AVM03_06110) - 1382213..1382542 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  AVM03_RS06120 (AVM03_06115) - 1382582..1382761 (-) 180 WP_003153093.1 YqzE family protein -
  AVM03_RS06125 (AVM03_06120) comGG 1382818..1383195 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  AVM03_RS06130 (AVM03_06125) comGF 1383196..1383591 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  AVM03_RS06135 (AVM03_06130) comGE 1383605..1383919 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  AVM03_RS06140 (AVM03_06135) comGD 1383903..1384340 (-) 438 WP_058906185.1 competence type IV pilus minor pilin ComGD Machinery gene
  AVM03_RS06145 (AVM03_06140) comGC 1384330..1384638 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=164465 AVM03_RS06095 WP_003153104.1 1379495..1379830(+) (sinR) [Bacillus amyloliquefaciens strain MBE1283]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=164465 AVM03_RS06095 WP_003153104.1 1379495..1379830(+) (sinR) [Bacillus amyloliquefaciens strain MBE1283]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment