Detailed information NTG0164468

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: AVM03_RS06140
• Genome accession: NZ_CP013727
• Coordinates: 1383903..1384340 (-)
• Length: 145 a.a.
• NCBI ID: WP_058906185.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1378903..1389340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS06090 (AVM03_06085)	sinI	1379288..1379461 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
AVM03_RS06095 (AVM03_06090)	sinR	1379495..1379830 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
AVM03_RS06100 (AVM03_06095)	tasA	1379878..1380663 (-)	786	WP_015388008.1	biofilm matrix protein TasA	-
AVM03_RS06105 (AVM03_06100)	sipW	1380727..1381311 (-)	585	WP_012117977.1	signal peptidase I SipW	-
AVM03_RS06110 (AVM03_06105)	tapA	1381283..1381954 (-)	672	WP_058906184.1	amyloid fiber anchoring/assembly protein TapA	-
AVM03_RS06115 (AVM03_06110)	-	1382213..1382542 (+)	330	WP_003153097.1	DUF3889 domain-containing protein	-
AVM03_RS06120 (AVM03_06115)	-	1382582..1382761 (-)	180	WP_003153093.1	YqzE family protein	-
AVM03_RS06125 (AVM03_06120)	comGG	1382818..1383195 (-)	378	WP_015388005.1	competence type IV pilus minor pilin ComGG	Machinery gene
AVM03_RS06130 (AVM03_06125)	comGF	1383196..1383591 (-)	396	WP_015388004.1	competence type IV pilus minor pilin ComGF	-
AVM03_RS06135 (AVM03_06130)	comGE	1383605..1383919 (-)	315	WP_015388003.1	competence type IV pilus minor pilin ComGE	Machinery gene
AVM03_RS06140 (AVM03_06135)	comGD	1383903..1384340 (-)	438	WP_058906185.1	competence type IV pilus minor pilin ComGD	Machinery gene
AVM03_RS06145 (AVM03_06140)	comGC	1384330..1384638 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
AVM03_RS06150 (AVM03_06145)	comGB	1384643..1385680 (-)	1038	WP_058906186.1	competence type IV pilus assembly protein ComGB	Machinery gene
AVM03_RS06155 (AVM03_06150)	comGA	1385667..1386737 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
AVM03_RS06160 (AVM03_06155)	-	1386929..1387879 (-)	951	WP_003153082.1	magnesium transporter CorA family protein	-
AVM03_RS06165 (AVM03_06160)	-	1388025..1389326 (+)	1302	WP_058906187.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16310.83 Da
• Isoelectric Point: 10.3725

>NTDB_id=164468 AVM03_RS06140 WP_058906185.1 1383903..1384340(-) (comGD) [Bacillus amyloliquefaciens strain MBE1283]
MNNNRRTENGFTLLESLVVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDTLHITLVTLPESLEFNEKGHPNSGGRIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=164468 AVM03_RS06140 WP_058906185.1 1383903..1384340(-) (comGD) [Bacillus amyloliquefaciens strain MBE1283]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGGTTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTTGAGCGTTCTTTTGATACGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAGGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	56.164	100	0.566