Detailed information NTG0163857

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ATY45_RS17990
• Genome accession: NZ_CP013675
• Coordinates: 3836026..3837084 (-)
• Length: 352 a.a.
• NCBI ID: WP_069964966.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain PXO236
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3831026..3842084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY45_RS25235	-	3831238..3832036 (+)	799	WP_094187728.1	IS5 family transposase	-
ATY45_RS17970 (ATY45_17440)	-	3832107..3834056 (-)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
ATY45_RS17975 (ATY45_17445)	-	3834076..3834609 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
ATY45_RS17980 (ATY45_17450)	-	3834606..3835271 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
ATY45_RS17985 (ATY45_17455)	-	3835268..3836026 (-)	759	WP_044757059.1	PilN domain-containing protein	-
ATY45_RS17990 (ATY45_17460)	comM	3836026..3837084 (-)	1059	WP_069964966.1	pilus assembly protein PilM	Machinery gene
ATY45_RS17995 (ATY45_17465)	-	3837300..3839729 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
ATY45_RS18000 (ATY45_17470)	-	3839797..3840753 (-)	957	WP_041182545.1	IS30-like element IS1112b family transposase	-
ATY45_RS18005 (ATY45_17475)	-	3841098..3841748 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37726.44 Da
• Isoelectric Point: 4.3924

>NTDB_id=163857 ATY45_RS17990 WP_069964966.1 3836026..3837084(-) (comM) [Xanthomonas oryzae pv. oryzae strain PXO236]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYTREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=163857 ATY45_RS17990 WP_069964966.1 3836026..3837084(-) (comM) [Xanthomonas oryzae pv. oryzae strain PXO236]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATACCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	51.282	99.716	0.511
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
pilM	Acinetobacter baumannii D1279779	50.568	100	0.506
pilM	Legionella pneumophila strain ERS1305867	47.578	99.716	0.474