Detailed information NTG0163838

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ATY44_RS18320
• Genome accession: NZ_CP013674
• Coordinates: 3904250..3905308 (-)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain PXO211
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3899250..3910308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY44_RS25660	-	3899462..3900260 (+)	799	WP_094187728.1	IS5 family transposase	-
ATY44_RS18300 (ATY44_17750)	-	3900331..3902280 (-)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
ATY44_RS18305 (ATY44_17755)	-	3902300..3902833 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
ATY44_RS18310 (ATY44_17760)	-	3902830..3903495 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
ATY44_RS18315 (ATY44_17765)	-	3903492..3904250 (-)	759	WP_044757059.1	PilN domain-containing protein	-
ATY44_RS18320 (ATY44_17770)	comM	3904250..3905308 (-)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
ATY44_RS18325 (ATY44_17775)	-	3905524..3907953 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
ATY44_RS18330 (ATY44_17780)	-	3908021..3908977 (-)	957	WP_041182719.1	IS30-like element IS1112b family transposase	-
ATY44_RS18335 (ATY44_17785)	-	3909322..3909972 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=163838 ATY44_RS18320 WP_011407795.1 3904250..3905308(-) (comM) [Xanthomonas oryzae pv. oryzae strain PXO211]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=163838 ATY44_RS18320 WP_011407795.1 3904250..3905308(-) (comM) [Xanthomonas oryzae pv. oryzae strain PXO211]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477