Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AT706_RS18650 Genome accession   NZ_CP013654
Coordinates   3630021..3630539 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3625021..3635539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS18630 (AT706_18630) yyzM 3626095..3626301 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  AT706_RS18635 (AT706_18635) yyaE 3626352..3628355 (+) 2004 WP_015385219.1 molybdopterin-dependent oxidoreductase -
  AT706_RS18640 (AT706_18640) ychF 3628482..3629582 (+) 1101 WP_015483981.1 redox-regulated ATPase YchF -
  AT706_RS18645 (AT706_18645) rpsF 3629693..3629980 (+) 288 WP_003236622.1 30S ribosomal protein S6 -
  AT706_RS18650 (AT706_18650) ssbA 3630021..3630539 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  AT706_RS18655 (AT706_18655) rpsR 3630583..3630822 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  AT706_RS18660 (AT706_18660) xth 3630887..3631645 (+) 759 WP_015385216.1 exodeoxyribonuclease III -
  AT706_RS18665 (AT706_18665) ccpB 3631704..3632636 (+) 933 WP_015385215.1 transcriptional regulator CcpB -
  AT706_RS18670 (AT706_18670) yyaH 3632692..3633072 (+) 381 WP_015483980.1 VOC family protein -
  AT706_RS18675 (AT706_18675) maa 3633088..3633642 (+) 555 WP_015385213.1 sugar O-acetyltransferase -
  AT706_RS18680 (AT706_18680) yyaJ 3633676..3635031 (-) 1356 WP_015483979.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=163563 AT706_RS18650 WP_003219228.1 3630021..3630539(+) (ssbA) [Bacillus subtilis subsp. subtilis strain BSD-2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=163563 AT706_RS18650 WP_003219228.1 3630021..3630539(+) (ssbA) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAACGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment