Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AT706_RS06420 Genome accession   NZ_CP013654
Coordinates   1239764..1240099 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234764..1245099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS06370 (AT706_06375) comGC 1234784..1235080 (+) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  AT706_RS06375 (AT706_06380) comGD 1235070..1235501 (+) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  AT706_RS06380 (AT706_06385) comGE 1235485..1235832 (+) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  AT706_RS06385 (AT706_06390) comGF 1235858..1236241 (+) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  AT706_RS06390 (AT706_06395) comGG 1236242..1236616 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  AT706_RS06395 (AT706_06400) spoIITA 1236688..1236867 (+) 180 WP_003230176.1 YqzE family protein -
  AT706_RS06400 (AT706_06405) yqzG 1236909..1237235 (-) 327 WP_015384086.1 YqzG/YhdC family protein -
  AT706_RS06405 (AT706_06410) tapA 1237505..1238266 (+) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  AT706_RS06410 (AT706_06415) sipW 1238250..1238822 (+) 573 WP_080030740.1 signal peptidase I SipW -
  AT706_RS06415 (AT706_06420) tasA 1238886..1239671 (+) 786 WP_003230183.1 biofilm matrix protein TasA -
  AT706_RS06420 (AT706_06425) sinR 1239764..1240099 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AT706_RS06425 (AT706_06430) sinI 1240133..1240306 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  AT706_RS06430 (AT706_06435) yqhG 1240489..1241283 (-) 795 WP_003230200.1 YqhG family protein -
  AT706_RS06435 (AT706_06440) hepAA 1241304..1242977 (-) 1674 WP_015384082.1 DEAD/DEAH box helicase -
  AT706_RS06440 (AT706_06445) gcvT 1243419..1244507 (+) 1089 WP_015384081.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=163523 AT706_RS06420 WP_003226345.1 1239764..1240099(-) (sinR) [Bacillus subtilis subsp. subtilis strain BSD-2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=163523 AT706_RS06420 WP_003226345.1 1239764..1240099(-) (sinR) [Bacillus subtilis subsp. subtilis strain BSD-2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment