Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   A6L50_RS05950 Genome accession   NZ_CP016680
Coordinates   1119354..1121543 (-) Length   729 a.a.
NCBI ID   WP_002234658.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22822     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1114354..1126543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L50_RS13985 - 1114900..1115034 (+) 135 Protein_1089 IS110 family transposase -
  A6L50_RS05925 (A6L50_05925) - 1115098..1116105 (+) 1008 WP_002237360.1 IS5 family transposase -
  A6L50_RS05930 (A6L50_05930) - 1116225..1117211 (+) 987 WP_065824932.1 IS5 family transposase -
  A6L50_RS12390 - 1117347..1118177 (+) 831 Protein_1092 IS110 family transposase -
  A6L50_RS05945 (A6L50_05945) - 1118234..1119307 (+) 1074 WP_002222887.1 NnrS family protein -
  A6L50_RS05950 (A6L50_05950) priA 1119354..1121543 (-) 2190 WP_002234658.1 primosomal protein N' Machinery gene
  A6L50_RS05955 (A6L50_05955) - 1121682..1122464 (+) 783 WP_002214390.1 DsbC family protein -
  A6L50_RS05960 (A6L50_05960) - 1122782..1124716 (-) 1935 WP_002258488.1 MacB family efflux pump subunit -
  A6L50_RS05965 (A6L50_05965) - 1124782..1125960 (-) 1179 WP_002219699.1 MacA family efflux pump subunit -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 80879.58 Da        Isoelectric Point: 7.2488

>NTDB_id=163520 A6L50_RS05950 WP_002234658.1 1119354..1121543(-) (priA) [Neisseria meningitidis strain M22822]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDTARILGVQTTFSDEPLLPESWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
AKLIEDWAEQGWIETTEAAKPVLRSCNGQASHSEFVLNADQQKASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSQMAAGKRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPYKCPDCG
NQDLTAVGHGTQRVEETLRAFLPKAAVVRVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYVVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADALEFLNAAKETLAPLLPASVSQFGAAPMLMVRLAERERAQIFLESPSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=163520 A6L50_RS05950 WP_002234658.1 1119354..1121543(-) (priA) [Neisseria meningitidis strain M22822]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGGGCGTTCAGACGACCTTTTCGGACGAACCGCTGCTGCCCGAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACCGGGCAGGCAGTATTTGCCGCATTGCCGCAAGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCCTTGTTTTACGCGTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCAGCGTTGAAGCAGGTAAACGCGCAGGCG
GCGAAATTAATCGAAGATTGGGCGGAGCAGGGTTGGATTGAAACGACGGAAGCGGCGAAGCCCGTTTTAAGGTCGTGTAA
TGGGCAGGCTTCGCACTCTGAATTTGTATTAAATGCTGACCAGCAGAAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAGGTGTATTTTGATGCGATGGCGAAAGTGTTG
GCTCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAAGCGCACGCAGGATTATCTGCGCGCGATGTTAG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCAGTGTTCACGCCGATGGATGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTATCATGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGCCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGCTGGCACAAGGCGCAAAGTGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGCTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCAGGCGGTATGTCGCTGGTGTACCTTAACCG
GCGCGGCTTCGCGCCCGCGCTGTTTTGCGGCGACTGCGGTCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTACAAATGCCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCGCCTTCCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACGAAATCG
ATATTCTGGTCGGCACGCAGATGCTCGCCAAAGGTCATGATTTCGCGCGGCTCAACCTCGTTATCGTATTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAGGTGTCCGGCAGGGCGGGGCG
CGCCGACAAGCCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACATCCCGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGTCGTGTTTGCCGAAAACGAATTGAACGAACGGCAAATGTTCGCCATGCCGCCCTTCGGTTTTCAGACCGCCGTCCGC
GCGGACGCGCCGCGTGTTGCCGATGCGCTGGAATTTCTCAATGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGCAAG
CGTTTCCCAGTTTGGCGCCGCCCCCATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATTTTCCTCGAATCCC
CGTCCCGACAGGATTTGCACCGTGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATTAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(207-361)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.401

100

0.369

Multiple sequence alignment