Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   ATM98_RS00350 Genome accession   NZ_CP013651
Coordinates   57580..58239 (-) Length   219 a.a.
NCBI ID   WP_061563669.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52580..63239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS00330 (ATM98_00330) - 53752..54330 (+) 579 WP_061563667.1 YutD family protein -
  ATM98_RS00335 (ATM98_00335) rlmN 54349..55437 (+) 1089 WP_048687731.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ATM98_RS00340 (ATM98_00340) - 55415..55948 (+) 534 WP_125389251.1 VanZ family protein -
  ATM98_RS00345 (ATM98_00345) trpB 56386..57573 (+) 1188 WP_061563668.1 tryptophan synthase subunit beta -
  ATM98_RS00350 (ATM98_00350) cclA/cilC 57580..58239 (-) 660 WP_061563669.1 A24 family peptidase Machinery gene
  ATM98_RS00355 (ATM98_00355) - 58393..58920 (+) 528 WP_048687737.1 Dps family protein -
  ATM98_RS00360 (ATM98_00360) - 59041..59259 (+) 219 WP_006596794.1 YqgQ family protein -
  ATM98_RS00365 (ATM98_00365) - 59298..59642 (+) 345 WP_048687808.1 rhodanese-like domain-containing protein -
  ATM98_RS00370 (ATM98_00370) - 59679..60404 (-) 726 WP_048687741.1 pseudouridine synthase -
  ATM98_RS00375 (ATM98_00375) typA 60642..62489 (+) 1848 WP_061563670.1 translational GTPase TypA -
  ATM98_RS00380 (ATM98_00380) - 62512..62778 (+) 267 WP_048687744.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24840.92 Da        Isoelectric Point: 7.4798

>NTDB_id=163385 ATM98_RS00350 WP_061563669.1 57580..58239(-) (cclA/cilC) [Streptococcus sp. A12]
MINFYFFTVGACMASFLGLVIDRFPESSIIRPRSHCDQCQQTLGFLDLIPILSQCLFQFRCRYCQSSLPYWYTLFEAWSG
LLFLLCYQGLLPIPHLLVLLGSCVLAIYDLRSMEYPLLLWLVLHALCLFFTSPTLLMGVFLFLGVLSAVYSIGIGAGDFL
LLATFSLTLSAVQVLLVMQGASLIGLLVFVFKKEKDRIPFVPCLFLSYHALLFFTMFSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=163385 ATM98_RS00350 WP_061563669.1 57580..58239(-) (cclA/cilC) [Streptococcus sp. A12]
ATGATCAACTTCTATTTTTTTACAGTCGGCGCCTGTATGGCCTCCTTTTTAGGTCTCGTCATCGACCGTTTTCCAGAAAG
CTCCATCATTCGTCCAAGAAGCCATTGCGACCAATGTCAACAGACCTTGGGATTTCTAGACTTGATCCCTATTCTTTCGC
AATGCCTTTTTCAATTCCGTTGCCGCTACTGCCAGAGTTCCCTTCCTTACTGGTATACTCTTTTTGAAGCCTGGAGTGGT
CTCCTCTTTTTGCTGTGCTACCAGGGTCTTCTTCCCATTCCTCATCTCCTGGTTCTTCTTGGCAGTTGCGTTTTAGCCAT
CTATGATTTGCGATCCATGGAGTACCCTCTCCTCCTCTGGCTAGTGCTTCACGCCCTTTGCCTGTTTTTCACCAGTCCTA
CCCTCTTGATGGGAGTCTTTCTCTTCTTAGGAGTCCTGTCAGCTGTTTACTCCATCGGCATTGGAGCAGGGGATTTTCTC
TTGCTGGCTACTTTTTCTTTGACCCTCTCGGCCGTCCAAGTCCTCCTAGTCATGCAAGGGGCTTCCCTCATTGGCCTCCT
AGTCTTTGTCTTTAAAAAAGAAAAAGACCGGATTCCTTTCGTTCCCTGTCTTTTTCTGAGTTATCATGCCTTACTGTTTT
TTACAATGTTTAGCAGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.765

97.26

0.484
  cclA/cilC Streptococcus pneumoniae Rx1

49.765

97.26

0.484
  cclA/cilC Streptococcus pneumoniae D39

49.765

97.26

0.484
  cclA/cilC Streptococcus pneumoniae R6

49.765

97.26

0.484
  cclA/cilC Streptococcus mitis NCTC 12261

49.296

97.26

0.479
  cclA/cilC Streptococcus pneumoniae TIGR4

50.242

94.521

0.475

Multiple sequence alignment