Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMK04_RS10915 Genome accession   NZ_CP013590
Coordinates   2211370..2211882 (+) Length   170 a.a.
NCBI ID   WP_064802580.1    Uniprot ID   A0AAJ3QYR7
Organism   Rhizobium sp. N871     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2206370..2216882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMK04_RS10905 (AMK04_CH02237) - 2207189..2207995 (-) 807 WP_064810388.1 DUF72 domain-containing protein -
  AMK04_RS33435 - 2208019..2208135 (-) 117 Protein_2189 GNAT family N-acetyltransferase -
  AMK04_RS10910 (AMK04_CH02238) uvrA 2208166..2211087 (-) 2922 WP_064802578.1 excinuclease ABC subunit UvrA -
  AMK04_RS10915 (AMK04_CH02239) ssb 2211370..2211882 (+) 513 WP_064802580.1 single-stranded DNA-binding protein Machinery gene
  AMK04_RS10920 (AMK04_CH02240) - 2212103..2212669 (+) 567 WP_064810389.1 DUF2569 family protein -
  AMK04_RS10925 (AMK04_CH02241) - 2212804..2213451 (-) 648 WP_064810390.1 MarC family protein -
  AMK04_RS10930 (AMK04_CH02242) gyrA 2213689..2216478 (+) 2790 WP_064802585.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18376.07 Da        Isoelectric Point: 5.3093

>NTDB_id=163169 AMK04_RS10915 WP_064802580.1 2211370..2211882(+) (ssb) [Rhizobium sp. N871]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFNSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGGGGNF
SRDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=163169 AMK04_RS10915 WP_064802580.1 2211370..2211882(+) (ssb) [Rhizobium sp. N871]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGACCCTGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAACCTCCGCATCGCGACCTCGGAAACCTGGCGCGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAGT
GGCATACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGATCAGCAGGGCCAGGACCGCTACTCGACGGAGGTCGTGCTGCAGGGCTT
CAATTCGACGTTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCGAGCTCCGGCTTCGGCGGTGGCCGTGGCGGCA
GCAGCAACAATGATTACGGCGATGACTACGGCGCCCCGGCTCCTTCATCATCGCCGAGCCGCGGCGGCGGCGGCAACTTC
TCGCGCGATCTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.851

100

0.5
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.494
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.394
  ssb Neisseria meningitidis MC58

36.872

100

0.388

Multiple sequence alignment