Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMC78_RS10450 Genome accession   NZ_CP013585
Coordinates   2119111..2119638 (+) Length   175 a.a.
NCBI ID   WP_064834841.1    Uniprot ID   -
Organism   Rhizobium phaseoli strain N161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2114111..2124638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMC78_RS10435 (AMC78_CH02124) - 2114619..2115425 (-) 807 WP_064836332.1 DUF72 domain-containing protein -
  AMC78_RS10440 (AMC78_CH02125) - 2115449..2115910 (-) 462 WP_064834840.1 GNAT family N-acetyltransferase -
  AMC78_RS10445 (AMC78_CH02126) uvrA 2115907..2118828 (-) 2922 WP_064831090.1 excinuclease ABC subunit UvrA -
  AMC78_RS10450 (AMC78_CH02127) ssb 2119111..2119638 (+) 528 WP_064834841.1 single-stranded DNA-binding protein Machinery gene
  AMC78_RS10455 (AMC78_CH02128) - 2119741..2120388 (-) 648 WP_064834842.1 MarC family protein -
  AMC78_RS10460 (AMC78_CH02129) gyrA 2120626..2123448 (+) 2823 WP_064834843.1 DNA gyrase subunit A -
  AMC78_RS34825 (AMC78_CH02130) - 2123679..2123813 (-) 135 WP_004671905.1 hypothetical protein -
  AMC78_RS33890 (AMC78_CH02131) - 2123850..2124005 (-) 156 WP_003539654.1 hypothetical protein -
  AMC78_RS10465 (AMC78_CH02132) - 2124137..2124427 (-) 291 WP_064834844.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18694.36 Da        Isoelectric Point: 5.3093

>NTDB_id=163161 AMC78_RS10450 WP_064834841.1 2119111..2119638(+) (ssb) [Rhizobium phaseoli strain N161]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGSGSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGG
GGGNFSRDLDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=163161 AMC78_RS10450 WP_064834841.1 2119111..2119638(+) (ssb) [Rhizobium phaseoli strain N161]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAATGTGGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGTGACCGCAATTCCGGCGAACGCCGCGAAAAGACGGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAATTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCAAGCTCCGGCTCCGGCTCCGGCTTCGGCGGCG
GCCGTGGCGGCAGCAGCAACAATGACTACGGCGACGATTATGGCGCCCCGGCTCCCTCTTCATCGCCGAGCCGCGGCGGT
GGCGGCGGCAACTTCTCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.681

100

0.48
  ssb Vibrio cholerae strain A1552

47.977

98.857

0.474
  ssb Neisseria meningitidis MC58

36.111

100

0.371
  ssb Neisseria gonorrhoeae MS11

35.556

100

0.366

Multiple sequence alignment