Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AMC83_RS10740 Genome accession   NZ_CP013557
Coordinates   2178848..2179363 (+) Length   171 a.a.
NCBI ID   WP_004671899.1    Uniprot ID   A0A1C3XWR3
Organism   Rhizobium phaseoli strain N841     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2156655..2178164 2178848..2179363 flank 684


Gene organization within MGE regions


Location: 2156655..2179363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMC83_RS10650 (AMC83_CH02181) recG 2157352..2159457 (-) 2106 WP_012483779.1 ATP-dependent DNA helicase RecG -
  AMC83_RS10655 (AMC83_CH02182) - 2159550..2159855 (+) 306 WP_004680228.1 succinate dehydrogenase assembly factor 2 -
  AMC83_RS10660 (AMC83_CH02183) mfd 2159852..2163355 (+) 3504 WP_064831085.1 transcription-repair coupling factor -
  AMC83_RS10665 (AMC83_CH02184) - 2163372..2163836 (+) 465 WP_012483782.1 OsmC family protein -
  AMC83_RS36080 - 2163836..2164216 (+) 381 WP_064831086.1 DUF6896 domain-containing protein -
  AMC83_RS10675 (AMC83_CH02185) - 2164313..2164870 (-) 558 WP_064831087.1 GrpB family protein -
  AMC83_RS10680 (AMC83_CH02186) - 2164878..2165549 (-) 672 WP_064831088.1 DsbA family oxidoreductase -
  AMC83_RS10685 (AMC83_CH02187) - 2165613..2167415 (-) 1803 WP_064831089.1 extracellular solute-binding protein -
  AMC83_RS10690 (AMC83_CH02188) - 2167704..2168357 (+) 654 WP_004680220.1 invasion associated locus B family protein -
  AMC83_RS34255 - 2168787..2170153 (+) 1367 Protein_2136 IS3 family transposase -
  AMC83_RS10705 (AMC83_CH02191) hspQ 2170217..2170546 (-) 330 WP_004671869.1 heat shock protein HspQ -
  AMC83_RS10710 (AMC83_CH02192) glnA 2170705..2172114 (-) 1410 WP_004671872.1 type I glutamate--ammonia ligase -
  AMC83_RS10715 (AMC83_CH02193) - 2172193..2172531 (-) 339 WP_003539626.1 P-II family nitrogen regulator -
  AMC83_RS10720 (AMC83_CH02195) - 2172877..2174349 (+) 1473 WP_064831733.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  AMC83_RS10725 (AMC83_CH02196) - 2174356..2175162 (-) 807 WP_012483789.1 DUF72 domain-containing protein -
  AMC83_RS10730 (AMC83_CH02197) - 2175186..2175647 (-) 462 WP_064825255.1 GNAT family N-acetyltransferase -
  AMC83_RS10735 (AMC83_CH02198) uvrA 2175644..2178565 (-) 2922 WP_064831090.1 excinuclease ABC subunit UvrA -
  AMC83_RS10740 (AMC83_CH02199) ssb 2178848..2179363 (+) 516 WP_004671899.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18406.10 Da        Isoelectric Point: 5.3093

>NTDB_id=163126 AMC83_RS10740 WP_004671899.1 2178848..2179363(+) (ssb) [Rhizobium phaseoli strain N841]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSSPSRGGGGGN
FSRDLDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=163126 AMC83_RS10740 WP_004671899.1 2178848..2179363(+) (ssb) [Rhizobium phaseoli strain N841]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAATGTGGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTTCGTATCGCGACCTCGGAGACCTGGCGTGACCGCAATTCCGGCGAACGCCGCGAAAAGACGGAAT
GGCACACTGTCGTCGTCTTCAACGAAGGCCTCTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGCCAATTGCAGACCCGCAAGTGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAGGGCTT
CAGCTCGACGCTGACGATGCTCGACGGCCGCGGCGATGGCGGCGGCGCAAGCTCCGGCTTCGGCGGCGGCCGTGGCGGCA
GCAGCAACAATGACTACGGCGACGATTATGGCGCCCCGGCTCCCTCTTCATCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3XWR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.571

100

0.497
  ssb Glaesserella parasuis strain SC1401

44.681

100

0.491
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.398
  ssb Neisseria meningitidis MC58

37.778

100

0.398

Multiple sequence alignment