Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AMC87_RS10210 | Genome accession | NZ_CP013537 |
| Coordinates | 2086829..2087344 (+) | Length | 171 a.a. |
| NCBI ID | WP_064827558.1 | Uniprot ID | - |
| Organism | Rhizobium phaseoli strain R630 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2081829..2092344
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMC87_RS10195 (AMC87_CH02112) | - | 2082337..2083143 (-) | 807 | WP_064828858.1 | DUF72 domain-containing protein | - |
| AMC87_RS10200 (AMC87_CH02113) | - | 2083167..2083628 (-) | 462 | WP_064827556.1 | GNAT family N-acetyltransferase | - |
| AMC87_RS10205 (AMC87_CH02114) | uvrA | 2083625..2086546 (-) | 2922 | WP_064827557.1 | excinuclease ABC subunit UvrA | - |
| AMC87_RS10210 (AMC87_CH02115) | ssb | 2086829..2087344 (+) | 516 | WP_064827558.1 | single-stranded DNA-binding protein | Machinery gene |
| AMC87_RS10215 (AMC87_CH02116) | - | 2087447..2088094 (-) | 648 | WP_004671901.1 | MarC family protein | - |
| AMC87_RS10220 (AMC87_CH02117) | gyrA | 2088332..2091154 (+) | 2823 | WP_064827559.1 | DNA gyrase subunit A | - |
| AMC87_RS34510 (AMC87_CH02118) | - | 2091407..2091541 (-) | 135 | WP_004671905.1 | hypothetical protein | - |
| AMC87_RS33725 (AMC87_CH02119) | - | 2091578..2091733 (-) | 156 | WP_003539654.1 | hypothetical protein | - |
| AMC87_RS34590 (AMC87_CH02120) | - | 2091876..2092154 (-) | 279 | WP_064827560.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18416.14 Da Isoelectric Point: 5.3093
>NTDB_id=163098 AMC87_RS10210 WP_064827558.1 2086829..2087344(+) (ssb) [Rhizobium phaseoli strain R630]
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSPPSRGGGGGN
FSRDLDDDIPF
MAGSVNKVILVGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQQGQDRYSTEVVLQGFSSTLTMLDGRGDGGGASSGFGGGRGGSSNNDYGDDYGAPAPSSPPSRGGGGGN
FSRDLDDDIPF
Nucleotide
Download Length: 516 bp
>NTDB_id=163098 AMC87_RS10210 WP_064827558.1 2086829..2087344(+) (ssb) [Rhizobium phaseoli strain R630]
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTCCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAAGGCCTGTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGTCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAAGGCTT
CAGCTCGACGCTGACCATGCTCGATGGCCGCGGTGATGGCGGCGGCGCGAGCTCCGGCTTCGGCGGCGGCCGCGGCGGCA
GCAGCAACAACGACTACGGCGACGATTACGGCGCCCCGGCTCCGTCTTCACCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGATATCCCGTTCTGA
ATGGCTGGTAGCGTGAACAAGGTAATTCTGGTTGGAAACGTGGGTGCAGATCCCGAAATCCGCCGCACTCAGGATGGCCG
GCCGATCGCCAATCTCCGTATCGCGACCTCGGAGACCTGGCGCGACCGCAATTCCGGCGAACGCCGCGAAAAGACCGAAT
GGCACACCGTCGTCGTCTTCAACGAAGGCCTGTGCAAGGTCGTCGAGCAATATGTGAAGAAGGGCGCCAAGCTCTATATC
GAAGGTCAGCTGCAGACCCGCAAATGGCAGGACCAGCAGGGCCAGGACCGCTACTCGACGGAAGTGGTGCTGCAAGGCTT
CAGCTCGACGCTGACCATGCTCGATGGCCGCGGTGATGGCGGCGGCGCGAGCTCCGGCTTCGGCGGCGGCCGCGGCGGCA
GCAGCAACAACGACTACGGCGACGATTACGGCGCCCCGGCTCCGTCTTCACCGCCGAGCCGCGGCGGTGGCGGCGGCAAC
TTCTCGCGCGATCTCGACGACGATATCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48.571 |
100 |
0.497 |
| ssb | Glaesserella parasuis strain SC1401 |
44.681 |
100 |
0.491 |
| ssb | Neisseria gonorrhoeae MS11 |
37.43 |
100 |
0.392 |
| ssb | Neisseria meningitidis MC58 |
36.872 |
100 |
0.386 |