Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT730_RS09250 Genome accession   NZ_CP013484
Coordinates   1995113..1995652 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain ATCC 33787     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1990113..2000652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT730_RS09230 (AT730_09210) - 1990432..1990764 (-) 333 WP_005381196.1 hypothetical protein -
  AT730_RS09235 (AT730_09215) gspM 1990757..1991407 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  AT730_RS09240 (AT730_09220) - 1991404..1992849 (-) 1446 WP_064368803.1 hypothetical protein -
  AT730_RS09245 (AT730_09225) csrD 1992861..1994870 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  AT730_RS09250 (AT730_09230) ssb 1995113..1995652 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  AT730_RS09255 (AT730_09235) qstR 1995930..1996574 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  AT730_RS09260 (AT730_09240) galU 1996734..1997606 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AT730_RS09265 (AT730_09245) uvrA 1997756..2000578 (+) 2823 WP_064368804.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=163006 AT730_RS09250 WP_005381235.1 1995113..1995652(-) (ssb) [Vibrio alginolyticus strain ATCC 33787]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=163006 AT730_RS09250 WP_005381235.1 1995113..1995652(-) (ssb) [Vibrio alginolyticus strain ATCC 33787]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGTGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458

Multiple sequence alignment