Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AT726_RS13490 Genome accession   NZ_CP013476
Coordinates   302100..302228 (-) Length   42 a.a.
NCBI ID   WP_335338311.1    Uniprot ID   -
Organism   Turicibacter sp. H121     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 297100..307228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT726_RS01285 (AT726_01285) - 298533..298817 (+) 285 WP_068758865.1 hypothetical protein -
  AT726_RS01290 (AT726_01290) - 298851..299507 (-) 657 WP_055274862.1 hypothetical protein -
  AT726_RS01295 (AT726_01295) - 299680..300516 (-) 837 WP_055274860.1 hypothetical protein -
  AT726_RS01300 (AT726_01300) - 300664..300999 (-) 336 WP_055274858.1 GreA/GreB family elongation factor -
  AT726_RS01305 (AT726_01305) - 301280..301873 (+) 594 WP_068758866.1 hypothetical protein -
  AT726_RS13490 rcrQ 302100..302228 (-) 129 WP_335338311.1 hypothetical protein Regulator
  AT726_RS01310 (AT726_01310) - 302523..303035 (-) 513 WP_055243827.1 hypothetical protein -
  AT726_RS01315 (AT726_01315) - 303252..304604 (-) 1353 WP_068758867.1 DUF4179 domain-containing protein -
  AT726_RS01320 (AT726_01320) - 304702..305001 (-) 300 WP_082411170.1 RNA polymerase sigma factor -
  AT726_RS01325 (AT726_01325) - 305032..305256 (-) 225 WP_055243781.1 hypothetical protein -
  AT726_RS01330 (AT726_01330) - 305358..305999 (-) 642 WP_068758868.1 YesL family protein -
  AT726_RS01335 (AT726_01335) - 306264..306692 (-) 429 WP_055243777.1 gamma-glutamylcyclotransferase family protein -

Sequence

Protein


Download         Length: 42 a.a.        Molecular weight: 4953.83 Da        Isoelectric Point: 7.1635

>NTDB_id=162835 AT726_RS13490 WP_335338311.1 302100..302228(-) (rcrQ) [Turicibacter sp. H121]
MLILNEATFSIDTRMERQIQKTFDHIMQGCTTFIVLHRLSTI

Nucleotide


Download         Length: 129 bp        

>NTDB_id=162835 AT726_RS13490 WP_335338311.1 302100..302228(-) (rcrQ) [Turicibacter sp. H121]
ATGTTAATTTTAAATGAAGCAACTTTTTCGATTGATACACGTATGGAAAGGCAAATTCAGAAGACTTTTGATCATATCAT
GCAAGGGTGTACCACGTTCATTGTGCTTCATCGCCTGTCAACCATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.524

100

0.595
  comA Streptococcus mitis SK321

41.463

97.619

0.405
  comA Streptococcus mitis NCTC 12261

41.463

97.619

0.405
  comA Streptococcus gordonii str. Challis substr. CH1

41.463

97.619

0.405

Multiple sequence alignment