Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ATD26_RS08480 | Genome accession | NZ_CP013352 |
| Coordinates | 1880522..1880950 (+) | Length | 142 a.a. |
| NCBI ID | WP_035764036.1 | Uniprot ID | A0A2S7F9K9 |
| Organism | Clostridium butyricum strain JKY6D1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1870621..1914529 | 1880522..1880950 | within | 0 |
Gene organization within MGE regions
Location: 1870621..1914529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATD26_RS08395 (ATD26_08395) | - | 1870621..1872276 (-) | 1656 | WP_058371751.1 | recombinase family protein | - |
| ATD26_RS08400 (ATD26_08400) | - | 1872348..1872656 (-) | 309 | WP_058371752.1 | hypothetical protein | - |
| ATD26_RS08405 (ATD26_08405) | - | 1872646..1872915 (-) | 270 | WP_058371753.1 | DUF2442 domain-containing protein | - |
| ATD26_RS08410 (ATD26_08410) | - | 1872932..1873192 (-) | 261 | WP_058371754.1 | DUF4160 domain-containing protein | - |
| ATD26_RS08415 (ATD26_08415) | - | 1873221..1873727 (-) | 507 | WP_058371755.1 | helix-turn-helix domain-containing protein | - |
| ATD26_RS20850 | - | 1873956..1874105 (+) | 150 | WP_155594175.1 | hypothetical protein | - |
| ATD26_RS08420 (ATD26_08420) | - | 1874106..1874405 (+) | 300 | WP_058371756.1 | hypothetical protein | - |
| ATD26_RS08425 (ATD26_08425) | - | 1874374..1874559 (-) | 186 | WP_035764050.1 | hypothetical protein | - |
| ATD26_RS21365 (ATD26_08430) | - | 1874630..1875229 (+) | 600 | WP_224134155.1 | hypothetical protein | - |
| ATD26_RS20860 | - | 1875286..1875453 (+) | 168 | WP_155594176.1 | hypothetical protein | - |
| ATD26_RS08435 (ATD26_08435) | - | 1875479..1875718 (+) | 240 | WP_035764048.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| ATD26_RS08440 (ATD26_08440) | - | 1875944..1876801 (+) | 858 | WP_058371757.1 | rolling circle replication-associated protein | - |
| ATD26_RS08445 (ATD26_08445) | - | 1876785..1877168 (+) | 384 | WP_236901129.1 | VRR-NUC domain-containing protein | - |
| ATD26_RS08450 (ATD26_08450) | - | 1877196..1877354 (+) | 159 | WP_035764044.1 | hypothetical protein | - |
| ATD26_RS08455 (ATD26_08455) | - | 1877400..1878167 (+) | 768 | WP_058371758.1 | ParA family protein | - |
| ATD26_RS08460 (ATD26_08460) | - | 1878173..1879165 (+) | 993 | WP_058371759.1 | ParB/RepB/Spo0J family partition protein | - |
| ATD26_RS08465 (ATD26_08465) | - | 1879215..1879631 (+) | 417 | WP_058371760.1 | hypothetical protein | - |
| ATD26_RS08470 (ATD26_08470) | - | 1879647..1879922 (+) | 276 | WP_043666071.1 | hypothetical protein | - |
| ATD26_RS08475 (ATD26_08475) | - | 1879906..1880529 (+) | 624 | WP_058371761.1 | DUF5651 domain-containing protein | - |
| ATD26_RS08480 (ATD26_08480) | ssbA | 1880522..1880950 (+) | 429 | WP_035764036.1 | single-stranded DNA-binding protein | Machinery gene |
| ATD26_RS08485 (ATD26_08485) | - | 1880966..1881310 (+) | 345 | WP_035764034.1 | hypothetical protein | - |
| ATD26_RS20630 | - | 1881366..1881512 (+) | 147 | WP_080775794.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| ATD26_RS21070 | - | 1881499..1881666 (+) | 168 | WP_162830847.1 | hypothetical protein | - |
| ATD26_RS08490 (ATD26_08490) | - | 1881635..1881889 (+) | 255 | WP_035764032.1 | hypothetical protein | - |
| ATD26_RS20865 | - | 1881879..1882052 (+) | 174 | WP_155594177.1 | hypothetical protein | - |
| ATD26_RS08495 (ATD26_08495) | - | 1882079..1882525 (+) | 447 | WP_058371762.1 | hypothetical protein | - |
| ATD26_RS08500 (ATD26_08500) | - | 1882555..1882842 (+) | 288 | WP_058371763.1 | hypothetical protein | - |
| ATD26_RS20870 | - | 1882845..1883000 (+) | 156 | WP_155594178.1 | hypothetical protein | - |
| ATD26_RS08505 (ATD26_08505) | - | 1882993..1883382 (+) | 390 | WP_058371764.1 | hypothetical protein | - |
| ATD26_RS08510 (ATD26_08510) | - | 1883382..1883666 (+) | 285 | WP_002580799.1 | hypothetical protein | - |
| ATD26_RS08515 (ATD26_08515) | - | 1883710..1883907 (+) | 198 | WP_058371765.1 | hypothetical protein | - |
| ATD26_RS20875 | - | 1883901..1884071 (+) | 171 | WP_155594179.1 | hypothetical protein | - |
| ATD26_RS08520 (ATD26_08520) | - | 1884114..1884353 (+) | 240 | WP_058371766.1 | hypothetical protein | - |
| ATD26_RS08525 (ATD26_08525) | - | 1884367..1884861 (+) | 495 | WP_035764109.1 | hypothetical protein | - |
| ATD26_RS08530 (ATD26_08530) | - | 1885019..1885318 (+) | 300 | WP_373866288.1 | HNH endonuclease | - |
| ATD26_RS08535 (ATD26_08535) | - | 1885404..1885787 (+) | 384 | WP_043666037.1 | P27 family phage terminase small subunit | - |
| ATD26_RS08540 (ATD26_08540) | - | 1885777..1887543 (+) | 1767 | WP_058371944.1 | terminase large subunit | - |
| ATD26_RS08545 (ATD26_08545) | - | 1887601..1888806 (+) | 1206 | WP_035764025.1 | phage portal protein | - |
| ATD26_RS08550 (ATD26_08550) | - | 1888799..1889377 (+) | 579 | WP_058371767.1 | HK97 family phage prohead protease | - |
| ATD26_RS08555 (ATD26_08555) | - | 1889367..1890779 (+) | 1413 | WP_058371768.1 | phage major capsid protein | - |
| ATD26_RS08560 (ATD26_08560) | - | 1890793..1891077 (+) | 285 | WP_035764019.1 | hypothetical protein | - |
| ATD26_RS08565 (ATD26_08565) | - | 1891090..1891374 (+) | 285 | WP_035764017.1 | hypothetical protein | - |
| ATD26_RS08570 (ATD26_08570) | - | 1891374..1891694 (+) | 321 | WP_058371769.1 | hypothetical protein | - |
| ATD26_RS08575 (ATD26_08575) | - | 1891687..1892043 (+) | 357 | WP_035764014.1 | HK97 gp10 family phage protein | - |
| ATD26_RS08580 (ATD26_08580) | - | 1892040..1892369 (+) | 330 | WP_058371770.1 | hypothetical protein | - |
| ATD26_RS08585 (ATD26_08585) | - | 1892371..1892940 (+) | 570 | WP_058371771.1 | major tail protein | - |
| ATD26_RS08590 (ATD26_08590) | - | 1892952..1893293 (+) | 342 | WP_043666011.1 | hypothetical protein | - |
| ATD26_RS20880 | - | 1893347..1893496 (+) | 150 | WP_171781531.1 | hypothetical protein | - |
| ATD26_RS08595 (ATD26_08595) | - | 1893516..1896422 (+) | 2907 | WP_058371772.1 | hypothetical protein | - |
| ATD26_RS08600 (ATD26_08600) | - | 1896422..1897126 (+) | 705 | WP_058371773.1 | phage tail protein | - |
| ATD26_RS08605 (ATD26_08605) | - | 1897126..1898814 (+) | 1689 | WP_058371774.1 | phage tail spike protein | - |
| ATD26_RS08610 (ATD26_08610) | - | 1898830..1899675 (+) | 846 | WP_058371775.1 | hypothetical protein | - |
| ATD26_RS08615 (ATD26_08615) | - | 1899704..1900216 (+) | 513 | WP_058371776.1 | hypothetical protein | - |
| ATD26_RS21370 (ATD26_08620) | - | 1900230..1901000 (+) | 771 | WP_058371777.1 | hypothetical protein | - |
| ATD26_RS08625 (ATD26_08625) | - | 1901000..1901257 (+) | 258 | WP_058371778.1 | hypothetical protein | - |
| ATD26_RS20885 | - | 1901259..1901390 (+) | 132 | WP_155594180.1 | XkdX family protein | - |
| ATD26_RS08630 (ATD26_08630) | - | 1901621..1902463 (+) | 843 | WP_058371779.1 | DUF6236 family protein | - |
| ATD26_RS08635 (ATD26_08635) | - | 1902855..1903292 (+) | 438 | WP_058371780.1 | phage holin family protein | - |
| ATD26_RS08640 (ATD26_08640) | - | 1903341..1904978 (+) | 1638 | WP_058371781.1 | glycoside hydrolase family protein | - |
| ATD26_RS20890 (ATD26_08645) | - | 1905200..1905979 (+) | 780 | WP_058371782.1 | hypothetical protein | - |
| ATD26_RS08650 (ATD26_08650) | miaB | 1906130..1907500 (+) | 1371 | WP_058371783.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| ATD26_RS08655 (ATD26_08655) | - | 1907640..1908704 (+) | 1065 | WP_024040091.1 | hypothetical protein | - |
| ATD26_RS08660 (ATD26_08660) | ybaK | 1908794..1909279 (-) | 486 | WP_043852949.1 | Cys-tRNA(Pro) deacylase | - |
| ATD26_RS08665 (ATD26_08665) | - | 1910156..1911142 (+) | 987 | WP_003414527.1 | tyrosine recombinase XerC | - |
| ATD26_RS08670 (ATD26_08670) | - | 1911203..1911760 (-) | 558 | WP_046058317.1 | hypothetical protein | - |
| ATD26_RS08675 (ATD26_08675) | - | 1911909..1912331 (-) | 423 | WP_035765681.1 | hypothetical protein | - |
| ATD26_RS08680 (ATD26_08680) | lexA | 1912520..1913125 (+) | 606 | WP_002580094.1 | transcriptional repressor LexA | - |
| ATD26_RS08685 (ATD26_08685) | - | 1913243..1914529 (-) | 1287 | WP_058371784.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15495.26 Da Isoelectric Point: 4.5423
>NTDB_id=162231 ATD26_RS08480 WP_035764036.1 1880522..1880950(+) (ssbA) [Clostridium butyricum strain JKY6D1]
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDRYNPKTNQNEADFIPIVIWGKQAENTANYMSKGGQVAISGKIQTRS
YDAKDGTKRYITEVVADQFGGVQFLGNKGEVNQNDGSNNFGNMNQDIFEEDITPVDGGDMPF
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDRYNPKTNQNEADFIPIVIWGKQAENTANYMSKGGQVAISGKIQTRS
YDAKDGTKRYITEVVADQFGGVQFLGNKGEVNQNDGSNNFGNMNQDIFEEDITPVDGGDMPF
Nucleotide
Download Length: 429 bp
>NTDB_id=162231 ATD26_RS08480 WP_035764036.1 1880522..1880950(+) (ssbA) [Clostridium butyricum strain JKY6D1]
GTGAATAAAGTAGTTTTAATAGGAAGATTAACTAAAGATCCTGAACTTAGATTTACACCTGGAAGTGGTGCAGCGGTAAC
AACTTTAACATTAGCAGTTGATAGATATAATCCAAAGACTAACCAAAATGAAGCTGATTTTATTCCTATAGTAATATGGG
GTAAACAAGCTGAAAACACTGCAAATTATATGAGTAAAGGCGGACAAGTTGCTATTAGCGGAAAAATTCAAACTAGAAGT
TATGATGCTAAAGATGGTACTAAGAGATATATTACTGAAGTAGTAGCAGATCAATTTGGTGGTGTTCAGTTTCTAGGGAA
TAAGGGTGAAGTAAATCAGAATGATGGTTCTAATAATTTTGGAAATATGAATCAAGACATATTTGAAGAGGATATAACAC
CAGTAGATGGAGGGGACATGCCTTTTTAA
GTGAATAAAGTAGTTTTAATAGGAAGATTAACTAAAGATCCTGAACTTAGATTTACACCTGGAAGTGGTGCAGCGGTAAC
AACTTTAACATTAGCAGTTGATAGATATAATCCAAAGACTAACCAAAATGAAGCTGATTTTATTCCTATAGTAATATGGG
GTAAACAAGCTGAAAACACTGCAAATTATATGAGTAAAGGCGGACAAGTTGCTATTAGCGGAAAAATTCAAACTAGAAGT
TATGATGCTAAAGATGGTACTAAGAGATATATTACTGAAGTAGTAGCAGATCAATTTGGTGGTGTTCAGTTTCTAGGGAA
TAAGGGTGAAGTAAATCAGAATGATGGTTCTAATAATTTTGGAAATATGAATCAAGACATATTTGAAGAGGATATAACAC
CAGTAGATGGAGGGGACATGCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
40.571 |
100 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.825 |
88.732 |
0.415 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.706 |
95.775 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50 |
76.056 |
0.38 |