Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOA14_RS07070 Genome accession   NZ_CP013342
Coordinates   1466908..1467453 (-) Length   181 a.a.
NCBI ID   WP_062901267.1    Uniprot ID   -
Organism   Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1461908..1472453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOA14_RS07040 (AOA14_07055) - 1463241..1463702 (+) 462 WP_062901263.1 thioesterase family protein -
  AOA14_RS07045 (AOA14_07060) - 1463979..1464443 (+) 465 WP_234179347.1 hypothetical protein -
  AOA14_RS07050 (AOA14_07065) ribD 1464470..1465420 (+) 951 WP_062903051.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  AOA14_RS07055 (AOA14_07070) - 1465429..1466055 (+) 627 WP_062901265.1 riboflavin synthase -
  AOA14_RS07060 (AOA14_07075) - 1466052..1466414 (+) 363 WP_062901266.1 hypothetical protein -
  AOA14_RS07065 (AOA14_07080) - 1466424..1466894 (-) 471 WP_003046818.1 MmcB family DNA repair protein -
  AOA14_RS07070 (AOA14_07085) ssb 1466908..1467453 (-) 546 WP_062901267.1 single-stranded DNA-binding protein Machinery gene
  AOA14_RS07075 (AOA14_07090) - 1467485..1469356 (-) 1872 WP_062901268.1 ferrous iron transporter B -
  AOA14_RS07080 (AOA14_07095) - 1469353..1469604 (-) 252 WP_003046824.1 FeoA family protein -
  AOA14_RS07085 (AOA14_07100) - 1469668..1470354 (-) 687 WP_202988420.1 COQ9 family protein -
  AOA14_RS07090 (AOA14_07105) - 1470354..1471286 (-) 933 WP_062901269.1 DMT family transporter -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18647.36 Da        Isoelectric Point: 5.0006

>NTDB_id=162172 AOA14_RS07070 WP_062901267.1 1466908..1467453(-) (ssb) [Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSEQWKDRMTGERKERTEWHNVVINGDGLVGVVERYLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEVVVAGMGGTLTMLDGAPGGGGGGSRGGDSWSQGGGSSGGWDQGGAASGGSSGGGWNQGG
GGASGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=162172 AOA14_RS07070 WP_062901267.1 1466908..1467453(-) (ssb) [Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1]
ATGGCTGGCAGCGTCAACAAAGTTATTCTGATCGGCAATCTGGGCGCCGATCCCGAAATCAAGTCGTTCCAGAACGGCGG
CAAGATTGCCAATATCCGCATCGCGACCTCCGAACAGTGGAAGGACCGCATGACCGGAGAGCGCAAGGAGCGCACCGAAT
GGCACAATGTCGTCATCAACGGCGACGGCCTCGTCGGCGTCGTCGAGCGCTACCTTAAAAAGGGCTCGAAGGTTTATATC
GAAGGATCCTTGCGCACTCGCAAGTGGCAGGACCGTGACGGCAATGATCGCTACACGACCGAAGTCGTCGTCGCTGGCAT
GGGCGGCACCTTGACCATGCTCGACGGTGCGCCTGGCGGCGGCGGCGGCGGCTCGCGCGGCGGCGATAGCTGGTCGCAGG
GCGGCGGATCGAGCGGCGGCTGGGATCAGGGTGGCGCCGCGTCCGGCGGCAGTTCGGGCGGCGGCTGGAACCAGGGCGGC
GGCGGCGCCTCGGGCGGCGGACGTCCGCCGTTCGACGACGATCTGGACGACGACGTCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

97.79

0.481
  ssb Glaesserella parasuis strain SC1401

44.149

100

0.459
  ssb Neisseria meningitidis MC58

36.413

100

0.37
  ssb Neisseria gonorrhoeae MS11

36.413

100

0.37

Multiple sequence alignment