Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ASZ87_RS06970 | Genome accession | NZ_CP013309 |
| Coordinates | 1503114..1503647 (-) | Length | 177 a.a. |
| NCBI ID | WP_000168289.1 | Uniprot ID | Q9KUW2 |
| Organism | Vibrio cholerae strain E1162 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1498114..1508647
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASZ87_RS06950 (ASZ87_01340) | - | 1498569..1498886 (-) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
| ASZ87_RS06955 (ASZ87_01341) | gspM | 1498879..1499529 (-) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| ASZ87_RS06960 (ASZ87_01342) | - | 1499526..1500965 (-) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| ASZ87_RS06965 (ASZ87_01343) | csrD | 1500978..1502990 (-) | 2013 | WP_001918202.1 | RNase E specificity factor CsrD | - |
| ASZ87_RS06970 (ASZ87_01344) | ssb | 1503114..1503647 (-) | 534 | WP_000168289.1 | single-stranded DNA-binding protein | Machinery gene |
| ASZ87_RS06975 (ASZ87_01345) | qstR | 1503939..1504583 (+) | 645 | WP_001188316.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ASZ87_RS06980 (ASZ87_01346) | galU | 1504756..1505628 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ASZ87_RS06985 (ASZ87_01347) | uvrA | 1505784..1508606 (+) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19672.90 Da Isoelectric Point: 5.7626
>NTDB_id=161816 ASZ87_RS06970 WP_000168289.1 1503114..1503647(-) (ssb) [Vibrio cholerae strain E1162]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=161816 ASZ87_RS06970 WP_000168289.1 1503114..1503647(-) (ssb) [Vibrio cholerae strain E1162]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| ssb | Glaesserella parasuis strain SC1401 |
50.265 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |