Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ASZ80_RS02180 | Genome accession | NZ_CP013301 |
| Coordinates | 432831..433364 (+) | Length | 177 a.a. |
| NCBI ID | WP_000168289.1 | Uniprot ID | Q9KUW2 |
| Organism | Vibrio cholerae strain C5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 427831..438364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASZ80_RS02165 (ASZ80_00423) | uvrA | 427872..430694 (-) | 2823 | WP_000357696.1 | excinuclease ABC subunit UvrA | - |
| ASZ80_RS02170 (ASZ80_00424) | galU | 430850..431722 (-) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ASZ80_RS02175 (ASZ80_00425) | qstR | 431895..432539 (-) | 645 | WP_001188316.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ASZ80_RS02180 (ASZ80_00426) | ssb | 432831..433364 (+) | 534 | WP_000168289.1 | single-stranded DNA-binding protein | Machinery gene |
| ASZ80_RS02185 (ASZ80_00427) | csrD | 433488..435500 (+) | 2013 | WP_053035027.1 | RNase E specificity factor CsrD | - |
| ASZ80_RS02190 (ASZ80_00428) | - | 435513..436952 (+) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| ASZ80_RS02195 (ASZ80_00429) | gspM | 436949..437599 (+) | 651 | WP_000835144.1 | type II secretion system protein GspM | - |
| ASZ80_RS02200 (ASZ80_00430) | - | 437592..437909 (+) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19672.90 Da Isoelectric Point: 5.7626
>NTDB_id=161615 ASZ80_RS02180 WP_000168289.1 432831..433364(+) (ssb) [Vibrio cholerae strain C5]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=161615 ASZ80_RS02180 WP_000168289.1 432831..433364(+) (ssb) [Vibrio cholerae strain C5]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGTTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| ssb | Glaesserella parasuis strain SC1401 |
50.265 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |